genoCN 1.6.0
Wei Sun
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/genoCN | | Last Changed Rev: 59920 / Revision: 64395 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
install for i386
* installing *source* package 'genoCN' ...
** libs
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c tnorm_mle.c -o tnorm_mle.o
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c utility.c -o utility.o
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c xCNV.c -o xCNV.o
xCNV.c: In function 'emiss':
xCNV.c:317:25: warning: unused variable 'k' [-Wunused-variable]
xCNV.c:317:16: warning: unused variable 'K' [-Wunused-variable]
xCNV.c: In function 'baum_welch':
xCNV.c:787:20: warning: unused variable 'sd_b_tmp' [-Wunused-variable]
xCNV.c:787:10: warning: unused variable 'mu_b_tmp' [-Wunused-variable]
xCNV.c:762:10: warning: variable 'LL' set but not used [-Wunused-but-set-variable]
xCNV.c:1839:24: warning: 'pbf' may be used uninitialized in this function [-Wuninitialized]
xCNV.c:1839:24: warning: 'nGtp' may be used uninitialized in this function [-Wuninitialized]
gcc -shared -s -static-libgcc -o genoCN.dll tmp.def tnorm_mle.o utility.o xCNV.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/genoCN.buildbin-libdir/genoCN/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'genoCN.Rnw'
** testing if installed package can be loaded
add DLL for x64
* installing *source* package 'genoCN' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c tnorm_mle.c -o tnorm_mle.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c utility.c -o utility.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c xCNV.c -o xCNV.o
xCNV.c: In function 'emiss':
xCNV.c:317:25: warning: unused variable 'k' [-Wunused-variable]
xCNV.c:317:16: warning: unused variable 'K' [-Wunused-variable]
xCNV.c: In function 'baum_welch':
xCNV.c:787:20: warning: unused variable 'sd_b_tmp' [-Wunused-variable]
xCNV.c:787:10: warning: unused variable 'mu_b_tmp' [-Wunused-variable]
xCNV.c:762:10: warning: variable 'LL' set but not used [-Wunused-but-set-variable]
xCNV.c:1839:24: warning: 'pbf' may be used uninitialized in this function [-Wuninitialized]
xCNV.c:1839:24: warning: 'nGtp' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o genoCN.dll tmp.def tnorm_mle.o utility.o xCNV.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/genoCN.buildbin-libdir/genoCN/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genoCN' as genoCN_1.6.0.zip
* DONE (genoCN)