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Package 188/515HostnameOS / ArchBUILDCHECKBUILD BIN
gene2pathway 2.6.0
Holger Froehlich
Snapshot Date: 2012-03-07 18:21:26 -0800 (Wed, 07 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/gene2pathway
Last Changed Rev: 59920 / Revision: 63606
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS [ OK ]

Summary

Package: gene2pathway
Version: 2.6.0
Command: rm -rf gene2pathway.buildbin-libdir && mkdir gene2pathway.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gene2pathway_2.6.0.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R gene2pathway.buildbin-libdir
StartedAt: 2012-03-08 05:07:43 -0800 (Thu, 08 Mar 2012)
EndedAt: 2012-03-08 05:08:25 -0800 (Thu, 08 Mar 2012)
EllapsedTime: 41.7 seconds
RetCode: 0
Status:  OK 
PackageFile: gene2pathway_2.6.0.tgz
PackageFileSize: 2.67 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gene2pathway.buildbin-libdir gene2pathway_2.6.0.tar.gz'
>>>>>>> 

* installing *source* package 'gene2pathway' ...
** R
** data
** inst
** preparing package for lazy loading
Note: Method with signature "PrimitiveSOAPType#list" chosen for function "resolve",
 target signature "PrimitiveSOAPType#SchemaCollection".
 "SOAPType#SchemaCollection" would also be valid
Warning: Class "VirtualSOAPClass" is defined (with package slot 'SSOAP') but no metadata object found to revise subclass information---not exported?  Making a copy in package '.GlobalEnv'
Warning: Class "VirtualXMLSchemaClass" is defined (with package slot 'XMLSchema') but no metadata object found to revise subclass information---not exported?  Making a copy in package '.GlobalEnv'
Note: Method with signature "ArrayType#list" chosen for function "resolve",
 target signature "ArrayType#SchemaCollection".
 "SimpleSequenceType#SchemaCollection" would also be valid
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "connection" in package 'graph' seems equivalent to one from package 'SSOAP' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "connection" in package 'IRanges' seems equivalent to one from package 'SSOAP' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "file" in package 'IRanges' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'gene2pathway.Rnw' using 'latin1' 
** testing if installed package can be loaded
Note: Method with signature "PrimitiveSOAPType#list" chosen for function "resolve",
 target signature "PrimitiveSOAPType#SchemaCollection".
 "SOAPType#SchemaCollection" would also be valid
Note: Method with signature "ArrayType#list" chosen for function "resolve",
 target signature "ArrayType#SchemaCollection".
 "SimpleSequenceType#SchemaCollection" would also be valid
Warning messages:
1: Class "VirtualSOAPClass" is defined (with package slot 'SSOAP') but no metadata object found to revise subclass information---not exported?  Making a copy in package '.GlobalEnv' 
2: Class "VirtualXMLSchemaClass" is defined (with package slot 'XMLSchema') but no metadata object found to revise subclass information---not exported?  Making a copy in package '.GlobalEnv' 

* DONE (gene2pathway)