install for i386
* installing *source* package 'RBGL' ...
found boostIncl header sources and tar archive;\n using what is there.
** libs
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c bbc.cpp -o bbc.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from bbc.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
In file included from bbc.cpp:2:0:
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>, EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>, IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>, DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>, PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, long long unsigned int, long long unsigned int&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, ShortestPaths = boost::detail::graph::brandes_dijkstra_shortest_paths<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t> >]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80:12: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >::m_decreased' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205:9: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c cliques.cpp -o cliques.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from cliques.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c clusteringCoef.cpp -o clusteringCoef.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from clusteringCoef.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
clusteringCoef.cpp: In function 'SEXPREC* graphGenerator(SEXP, SEXP, SEXP)':
clusteringCoef.cpp:394:40: warning: 'u' may be used uninitialized in this function [-Wuninitialized]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c dominatorTree.cpp -o dominatorTree.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from dominatorTree.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from edmonds_optimum_branching.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c hcs.cpp -o hcs.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from hcs.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c incrConnComp.cpp -o incrConnComp.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from incrConnComp.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c interfaces.cpp -o interfaces.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from interfaces.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c layout.cpp -o layout.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from layout.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
layout.cpp: In function 'SEXPREC* BGL_layout_internal(E_LAYOUT_METHOD, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
layout.cpp:83:18: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
layout.cpp:116:20: warning: unused variable 'r' [-Wunused-variable]
layout.cpp:117:20: warning: unused variable 'w' [-Wunused-variable]
layout.cpp:118:20: warning: unused variable 'h' [-Wunused-variable]
layout.cpp:121:7: warning: variable 'p' set but not used [-Wunused-but-set-variable]
In file included from layout.cpp:9:0:
fruchterman_reingold.hpp: In function 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, DisplacementMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t> >, Cooling = boost::linear_cooling<double>, DisplacementMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, unsigned int>, boost::simple_point<double>, boost::simple_point<double>&>]':
fruchterman_reingold.hpp:423:7: instantiated from 'static void boost::detail::fr_force_directed_layout<boost::detail::error_property_not_found>::run(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, boost::detail::error_property_not_found, const boost::bgl_named_params<Param, Tag, Rest>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t> >, Cooling = boost::linear_cooling<double>, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
fruchterman_reingold.hpp:449:3: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, const boost::bgl_named_params<P, T, R>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
fruchterman_reingold.hpp:470:3: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double]'
layout.cpp:112:66: instantiated from here
fruchterman_reingold.hpp:354:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
In file included from boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:13:0,
from layout.cpp:3:
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:147:49: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, DistanceZero) [with VertexAndEdgeListGraph = const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, DistanceZero = double]'
boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:155:9: instantiated from 'bool boost::detail::graph::kamada_kawai_spring_layout_impl<Graph, PositionMap, WeightMap, EdgeOrSideLength, Done, VertexIndexMap, DistanceMatrix, SpringStrengthMatrix, PartialDerivativeMap>::run() [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, EdgeOrSideLength = boost::detail::graph::edge_or_side<true, double>, Done = boost::layout_tolerance<double>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, unsigned int>, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, SpringStrengthMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, PartialDerivativeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double>, std::allocator<std::pair<double, double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, unsigned int>, std::pair<double, double>, std::pair<double, double>&>]'
boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:448:20: instantiated from 'bool boost::kamada_kawai_spring_layout(const Graph&, PositionMap, WeightMap, boost::detail::graph::edge_or_side<EdgeOrSideLength, T>, Done, typename boost::property_traits<WeightMap>::value_type, VertexIndexMap, DistanceMatrix, SpringStrengthMatrix, PartialDerivativeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, T = double, bool EdgeOrSideLength = true, Done = boost::layout_tolerance<double>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, unsigned int>, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, SpringStrengthMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, PartialDerivativeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double>, std::allocator<std::pair<double, double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, unsigned int>, std::pair<double, double>, std::pair<double, double>&>, typename boost::property_traits<WeightMap>::value_type = double]'
boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:482:74: instantiated from 'bool boost::kamada_kawai_spring_layout(const Graph&, PositionMap, WeightMap, boost::detail::graph::edge_or_side<EdgeOrSideLength, T>, Done, typename boost::property_traits<WeightMap>::value_type, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, T = double, bool EdgeOrSideLength = true, Done = boost::layout_tolerance<double>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, unsigned int>, typename boost::property_traits<WeightMap>::value_type = double]'
boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:538:59: instantiated from 'bool boost::kamada_kawai_spring_layout(const Graph&, PositionMap, WeightMap, boost::detail::graph::edge_or_side<EdgeOrSideLength, T>) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, T = double, bool EdgeOrSideLength = true]'
layout.cpp:85:62: instantiated from here
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80:12: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205:9: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c minST.cpp -o minST.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from minST.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
In file included from minST.cpp:2:0:
boostIncl/boost/graph/detail/edge.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::directedS, double>, OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > >, Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>, Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, unsigned int, unsigned int&>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
boostIncl/boost/graph/detail/edge.hpp:29:34: warning: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/kruskal_min_spanning_tree.hpp:77:51: note: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' was declared here
boostIncl/boost/graph/kruskal_min_spanning_tree.hpp:47:5: warning: '*((void*)(& ei)+16).__gnu_cxx::__normal_iterator<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c mincut.cpp -o mincut.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from mincut.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
mincut.cpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
mincut.cpp:98:54: warning: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >*, std::vector<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > >, std::allocator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int> > > > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wuninitialized]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c ordering.cpp -o ordering.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from ordering.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
ordering.cpp: In function 'SEXPREC* BGL_king_ordering(SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:180:48: warning: variable 'id' set but not used [-Wunused-but-set-variable]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c planar.cpp -o planar.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from planar.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXP, SEXP, SEXP)':
planar.cpp:151:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:153:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:161:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:165:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXP, SEXP, SEXP)':
planar.cpp:256:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXP, SEXP, SEXP, SEXP)':
planar.cpp:369:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXP, SEXP, SEXP)':
planar.cpp:461:6: warning: unused variable 'i' [-Wunused-variable]
planar.cpp: In function 'SEXPREC* makeConnected(SEXP, SEXP, SEXP)':
planar.cpp:485:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* makeBiconnectedPlanar(SEXP, SEXP, SEXP)':
planar.cpp:539:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from planar.cpp:5:0:
boostIncl/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, unsigned int> >, OutputIterator = std::back_insert_iterator<std::vector<unsigned int> >, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, unsigned int>]':
boostIncl/boost/graph/planar_canonical_ordering.hpp:149:17: warning: 'second_vertex' may be used uninitialized in this function [-Wuninitialized]
In file included from planar.cpp:11:0:
boostIncl/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder<Graph, MateMap, VertexIndexMap>::augment_matching() [with Graph = R_adjacency_list<boost::undirectedS, int>, MateMap = unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>]':
boostIncl/boost/graph/max_cardinality_matching.hpp:334:7: warning: 'w' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/max_cardinality_matching.hpp:333:7: warning: 'v' may be used uninitialized in this function [-Wuninitialized]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c shortestPath.cpp -o shortestPath.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from shortestPath.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
In file included from shortestPath.cpp:4:0:
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:171:67: instantiated from 'bool boost::detail::johnson_dispatch(VertexAndEdgeListGraph&, DistanceMatrix&, const boost::bgl_named_params<P, T, R>&, Weight, VertexID) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, P = int, T = int, R = boost::no_property, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>]'
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:198:63: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>]'
shortestPath.cpp:56:46: instantiated from here
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80:12: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205:9: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c sna.cpp -o sna.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from sna.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
sna.cpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
sna.cpp:161:9: warning: variable 'res_cap' set but not used [-Wunused-but-set-variable]
In file included from sna.cpp:3:0:
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:171:67: instantiated from 'bool boost::detail::johnson_dispatch(VertexAndEdgeListGraph&, DistanceMatrix&, const boost::bgl_named_params<P, T, R>&, Weight, VertexID) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, P = int, T = int, R = boost::no_property, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, unsigned int>]'
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:198:63: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>]'
sna.cpp:105:46: instantiated from here
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80:12: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205:9: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c transitive_closure.cpp -o transitive_closure.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from transitive_closure.cpp:16:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
transitive_closure.cpp: In function 'SEXPREC* BGL_transitive_closure_D(SEXP, SEXP, SEXP)':
transitive_closure.cpp:46:50: warning: '*((void*)(& ei)+16).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::sep_<unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function [-Wuninitialized]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -IboostIncl -O2 -Wall -mtune=core2 -c wavefront.cpp -o wavefront.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from wavefront.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -shared -s -static-libgcc -o RBGL.dll tmp.def bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/RBGL.buildbin-libdir/RBGL/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'RBGL.Rnw'
** testing if installed package can be loaded
add DLL for x64
* installing *source* package 'RBGL' ...
found boostIncl header sources and tar archive;\n using what is there.
** libs
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c bbc.cpp -o bbc.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from bbc.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
In file included from bbc.cpp:2:0:
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >*, double, double&, boost::vertex_centrality_t>, EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_centrality_t>, IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >&>, DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, double, double&>, DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, double, double&>, PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, long long unsigned int, long long unsigned int&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, ShortestPaths = boost::detail::graph::brandes_dijkstra_shortest_paths<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t> >]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80:12: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >::m_decreased' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205:9: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> > >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double> >, long long unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c cliques.cpp -o cliques.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from cliques.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c clusteringCoef.cpp -o clusteringCoef.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from clusteringCoef.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
clusteringCoef.cpp: In function 'SEXPREC* graphGenerator(SEXP, SEXP, SEXP)':
clusteringCoef.cpp:394:40: warning: 'u' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c dominatorTree.cpp -o dominatorTree.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from dominatorTree.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from edmonds_optimum_branching.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c hcs.cpp -o hcs.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from hcs.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c incrConnComp.cpp -o incrConnComp.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from incrConnComp.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c interfaces.cpp -o interfaces.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from interfaces.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c layout.cpp -o layout.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from layout.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
layout.cpp: In function 'SEXPREC* BGL_layout_internal(E_LAYOUT_METHOD, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
layout.cpp:83:18: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
layout.cpp:116:20: warning: unused variable 'r' [-Wunused-variable]
layout.cpp:117:20: warning: unused variable 'w' [-Wunused-variable]
layout.cpp:118:20: warning: unused variable 'h' [-Wunused-variable]
layout.cpp:121:7: warning: variable 'p' set but not used [-Wunused-but-set-variable]
In file included from layout.cpp:9:0:
fruchterman_reingold.hpp: In function 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, DisplacementMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t> >, Cooling = boost::linear_cooling<double>, DisplacementMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, long long unsigned int>, boost::simple_point<double>, boost::simple_point<double>&>]':
fruchterman_reingold.hpp:423:7: instantiated from 'static void boost::detail::fr_force_directed_layout<boost::detail::error_property_not_found>::run(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, boost::detail::error_property_not_found, const boost::bgl_named_params<Param, Tag, Rest>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t> >, Cooling = boost::linear_cooling<double>, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
fruchterman_reingold.hpp:449:3: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, const boost::bgl_named_params<P, T, R>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
fruchterman_reingold.hpp:470:3: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double]'
layout.cpp:112:66: instantiated from here
fruchterman_reingold.hpp:354:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
In file included from boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:13:0,
from layout.cpp:3:
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, long long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:147:49: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, DistanceZero) [with VertexAndEdgeListGraph = const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, long long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, DistanceZero = double]'
boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:155:9: instantiated from 'bool boost::detail::graph::kamada_kawai_spring_layout_impl<Graph, PositionMap, WeightMap, EdgeOrSideLength, Done, VertexIndexMap, DistanceMatrix, SpringStrengthMatrix, PartialDerivativeMap>::run() [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, EdgeOrSideLength = boost::detail::graph::edge_or_side<true, double>, Done = boost::layout_tolerance<double>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, long long unsigned int>, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, SpringStrengthMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, PartialDerivativeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double>, std::allocator<std::pair<double, double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, long long unsigned int>, std::pair<double, double>, std::pair<double, double>&>]'
boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:448:20: instantiated from 'bool boost::kamada_kawai_spring_layout(const Graph&, PositionMap, WeightMap, boost::detail::graph::edge_or_side<EdgeOrSideLength, T>, Done, typename boost::property_traits<WeightMap>::value_type, VertexIndexMap, DistanceMatrix, SpringStrengthMatrix, PartialDerivativeMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, T = double, bool EdgeOrSideLength = true, Done = boost::layout_tolerance<double>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, long long unsigned int>, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, SpringStrengthMatrix = __gnu_cxx::__normal_iterator<std::vector<double>*, std::vector<std::vector<double>, std::allocator<std::vector<double> > > >, PartialDerivativeMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double>, std::allocator<std::pair<double, double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, long long unsigned int>, std::pair<double, double>, std::pair<double, double>&>, typename boost::property_traits<WeightMap>::value_type = double]'
boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:482:74: instantiated from 'bool boost::kamada_kawai_spring_layout(const Graph&, PositionMap, WeightMap, boost::detail::graph::edge_or_side<EdgeOrSideLength, T>, Done, typename boost::property_traits<WeightMap>::value_type, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, T = double, bool EdgeOrSideLength = true, Done = boost::layout_tolerance<double>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, long long unsigned int>, typename boost::property_traits<WeightMap>::value_type = double]'
boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:538:59: instantiated from 'bool boost::kamada_kawai_spring_layout(const Graph&, PositionMap, WeightMap, boost::detail::graph::edge_or_side<EdgeOrSideLength, T>) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double> > >, boost::property<boost::edge_weight_t, double> >*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double>, boost::edge_weight_t>, T = double, bool EdgeOrSideLength = true]'
layout.cpp:85:62: instantiated from here
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80:12: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205:9: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c minST.cpp -o minST.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from minST.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
In file included from minST.cpp:2:0:
boostIncl/boost/graph/detail/edge.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::directedS, double>, OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > >, Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>, long long unsigned int, long long unsigned int&>, Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>, long long unsigned int, long long unsigned int&>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, long long unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
boostIncl/boost/graph/detail/edge.hpp:29:34: warning: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/kruskal_min_spanning_tree.hpp:77:51: note: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' was declared here
boostIncl/boost/graph/kruskal_min_spanning_tree.hpp:47:5: warning: '*((void*)(& ei)+32).__gnu_cxx::__normal_iterator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >::_M_current' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c mincut.cpp -o mincut.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from mincut.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
mincut.cpp: In function 'SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)':
mincut.cpp:98:54: warning: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > >*, std::vector<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > >, std::allocator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > > > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c ordering.cpp -o ordering.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from ordering.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
ordering.cpp: In function 'SEXPREC* BGL_king_ordering(SEXP, SEXP, SEXP, SEXP)':
ordering.cpp:180:48: warning: variable 'id' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c planar.cpp -o planar.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from planar.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXP, SEXP, SEXP)':
planar.cpp:151:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:153:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:161:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp:165:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXP, SEXP, SEXP)':
planar.cpp:256:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXP, SEXP, SEXP, SEXP)':
planar.cpp:369:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXP, SEXP, SEXP)':
planar.cpp:461:6: warning: unused variable 'i' [-Wunused-variable]
planar.cpp: In function 'SEXPREC* makeConnected(SEXP, SEXP, SEXP)':
planar.cpp:485:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
planar.cpp: In function 'SEXPREC* makeBiconnectedPlanar(SEXP, SEXP, SEXP)':
planar.cpp:539:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from planar.cpp:5:0:
boostIncl/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, long long unsigned int> >, OutputIterator = std::back_insert_iterator<std::vector<long long unsigned int> >, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, long long unsigned int>]':
boostIncl/boost/graph/planar_canonical_ordering.hpp:149:17: warning: 'second_vertex' may be used uninitialized in this function [-Wuninitialized]
In file included from planar.cpp:11:0:
boostIncl/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder<Graph, MateMap, VertexIndexMap>::augment_matching() [with Graph = R_adjacency_list<boost::undirectedS, int>, MateMap = long long unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>]':
boostIncl/boost/graph/max_cardinality_matching.hpp:334:7: warning: 'w' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/max_cardinality_matching.hpp:333:7: warning: 'v' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c shortestPath.cpp -o shortestPath.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from shortestPath.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
In file included from shortestPath.cpp:4:0:
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:171:67: instantiated from 'bool boost::detail::johnson_dispatch(VertexAndEdgeListGraph&, DistanceMatrix&, const boost::bgl_named_params<P, T, R>&, Weight, VertexID) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, P = int, T = int, R = boost::no_property, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>]'
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:198:63: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>]'
shortestPath.cpp:56:46: instantiated from here
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80:12: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205:9: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c sna.cpp -o sna.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from sna.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
sna.cpp: In function 'SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)':
sna.cpp:161:9: warning: variable 'res_cap' set but not used [-Wunused-but-set-variable]
In file included from sna.cpp:3:0:
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:171:67: instantiated from 'bool boost::detail::johnson_dispatch(VertexAndEdgeListGraph&, DistanceMatrix&, const boost::bgl_named_params<P, T, R>&, Weight, VertexID) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, P = int, T = int, R = boost::no_property, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long long unsigned int>]'
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:198:63: instantiated from 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>]'
sna.cpp:105:46: instantiated from here
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:49: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:124:53: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80:12: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' may be used uninitialized in this function [-Wuninitialized]
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205:9: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c transitive_closure.cpp -o transitive_closure.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from transitive_closure.cpp:16:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
transitive_closure.cpp: In function 'SEXPREC* BGL_transitive_closure_D(SEXP, SEXP, SEXP)':
transitive_closure.cpp:46:50: warning: '*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::sep_<long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, long long int>::m_src' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IboostIncl -O2 -Wall -mtune=core2 -c wavefront.cpp -o wavefront.o
In file included from c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/hash_set:61:0,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from wavefront.cpp:1:
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/backward/backward_warning.h:33:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
g++ -m64 -shared -s -static-libgcc -o RBGL.dll tmp.def bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/RBGL.buildbin-libdir/RBGL/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RBGL' as RBGL_1.30.1.zip
* DONE (RBGL)