MBCB 1.8.0
Jeff Allen
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/MBCB | | Last Changed Rev: 59920 / Revision: 64395 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/MBCB.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MBCB/DESCRIPTION' ... OK
* this is package 'MBCB' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'MBCB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bg.mcmc: no visible binding for global variable 'obsbead'
bg.mcmc: no visible binding for global variable 'obsnc'
esttruesig: no visible binding for global variable 'obsbead'
esttruesig: no visible binding for global variable 'truesignal'
liksig: no visible binding for global variable 'obsbead'
liksig.all: no visible binding for global variable 'obsbead'
liksig.all: no visible binding for global variable 'obsnc'
liksig.gamnoise: no visible binding for global variable 'nbead'
liksig.gamnoise: no visible binding for global variable 'sortedObsbead'
liksigall.gamnoise: no visible binding for global variable 'obsnc'
mbcb.correct: no visible binding for '<<-' assignment to 'trialNames'
mbcb.correct: no visible binding for '<<-' assignment to 'n.array'
mbcb.correct: no visible binding for '<<-' assignment to 'truesignal'
mbcb.correct: no visible binding for '<<-' assignment to 'truenoise'
mbcb.correct: no visible binding for '<<-' assignment to 'obsbead'
mbcb.correct: no visible binding for '<<-' assignment to 'obsnc'
mbcb.correct: no visible binding for '<<-' assignment to 'nbead'
mbcb.correct: no visible binding for global variable 'n.array'
mbcb.correct: no visible binding for global variable 'mbcbPB'
mbcb.correct: no visible binding for global variable 'obsbead'
mbcb.correct: no visible binding for '<<-' assignment to 'nnc'
mbcb.correct: no visible binding for '<<-' assignment to
'sortedObsbead'
mbcb.correct: no visible binding for global variable 'obsnc'
mbcb.correct: no visible binding for global variable 'nbead'
mbcb.correct: no visible binding for global variable 'nnc'
mbcb.correct: no visible binding for global variable 'sortedObsbead'
mbcb.gui : actions.norm: no visible binding for global variable
'main.nb'
mbcb.gui : normalizeData: no visible binding for global variable
'main.nb'
mbcb.gui : exportData: no visible binding for global variable 'main.nb'
mbcb.gui : exportData : <anonymous>: no visible binding for global
variable 'outFile'
mbcb.gui : exportData : setOut: no visible binding for '<<-' assignment
to 'outFile'
mbcb.gui : exportData : setOut: no visible binding for global variable
'outFile'
mbcb.gui : exportData : eval: no visible binding for '<<-' assignment
to 'mbcbPB'
mbcb.gui : removeItem: no visible binding for global variable
'importTab.f.dataList'
mbcb.gui: no visible binding for '<<-' assignment to 'main.nb'
mbcb.gui: no visible binding for global variable 'main.nb'
mbcb.main: no visible binding for global variable 'n.array'
mbcb.main: no visible binding for '<<-' assignment to 'bgCorrSig'
mbcb.main: no visible binding for global variable 'bgCorrSig'
mbcb.parseFile: no visible binding for global variable 'mbcbPB'
mbcb.parseFile: no visible binding for '<<-' assignment to 'types'
mbcb.parseFile: no visible binding for global variable 'types'
mbcb.parseFile: no visible binding for '<<-' assignment to 'sig2'
mbcb.parseFile: no visible binding for global variable 'sig2'
printMBCBOutput: no visible binding for '<<-' assignment to 'dete'
printMBCBOutput: no visible binding for global variable 'mbcbPB'
printMBCBOutput: no visible binding for global variable 'trialNames'
truesig: no visible binding for global variable 'obsbead'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK