HilbertVisGUI 1.12.1
Simon Anders
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/HilbertVisGUI | | Last Changed Rev: 61745 / Revision: 64395 | | Last Changed Date: 2012-01-03 12:53:52 -0800 (Tue, 03 Jan 2012) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HilbertVisGUI.buildbin-libdir HilbertVisGUI_1.12.1.tar.gz'
>>>>>>>
* installing *source* package 'HilbertVisGUI' ...
-n Checking for pkg-config...
/usr/bin/pkg-config
-n Checking for gtkmm-2.4...
found: version 2.18.2
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -fPIC -g -O2 -Wall -pedantic -c R_env_prot.c -o R_env_prot.o
R_env_prot.c: In function 'env_protect':
R_env_prot.c:49: warning: format '%p' expects type 'void *', but argument 4 has type 'SEXP'
R_env_prot.c: In function 'env_unprotect':
R_env_prot.c:75: warning: format '%p' expects type 'void *', but argument 4 has type 'SEXP'
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c R_interface.cc -o R_interface.o
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:510: warning: comparison between signed and unsigned integer expressions
R_interface.cc:509: warning: unused variable 'palette_level'
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702: warning: comparison between signed and unsigned integer expressions
R_interface.cc: In function 'RDataVector<double>* create_normal_or_Rle_RDataVector(SEXPREC*, long int, binning_mode)':
R_interface.cc:431: warning: control reaches end of non-void function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:119: warning: 'val' may be used uninitialized in this function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:180: warning: 'val' may be used uninitialized in this function
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:535: warning: 'datavec' may be used uninitialized in this function
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c colorizers.cc -o colorizers.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c display.cc -o display.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c ruler.cc -o ruler.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c window.cc -o window.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o HilbertVisGUI.so R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -L/Library/Frameworks/GTK+.framework/Resources/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-x11-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'HilbertVisGUI.Rnw'
** testing if installed package can be loaded
* DONE (HilbertVisGUI)
>>>>>>>
>>>>>>> FIXING LINKS FOR HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/i386/HilbertVisGUI.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/i386/HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/i386/HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/i386/HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/i386/HilbertVisGUI.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=HilbertVisGUI.buildbin-libdir --libs-only HilbertVisGUI_1.12.1.tar.gz'
>>>>>>>
* installing *source* package 'HilbertVisGUI' ...
-n Checking for pkg-config...
/usr/bin/pkg-config
-n Checking for gtkmm-2.4...
found: version 2.18.2
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -fPIC -g -O2 -Wall -pedantic -c R_env_prot.c -o R_env_prot.o
R_env_prot.c: In function 'env_protect':
R_env_prot.c:49: warning: format '%p' expects type 'void *', but argument 4 has type 'SEXP'
R_env_prot.c: In function 'env_unprotect':
R_env_prot.c:75: warning: format '%p' expects type 'void *', but argument 4 has type 'SEXP'
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c R_interface.cc -o R_interface.o
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:510: warning: comparison between signed and unsigned integer expressions
R_interface.cc:509: warning: unused variable 'palette_level'
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702: warning: comparison between signed and unsigned integer expressions
R_interface.cc: In function 'RDataVector<double>* create_normal_or_Rle_RDataVector(SEXPREC*, long int, binning_mode)':
R_interface.cc:431: warning: control reaches end of non-void function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:119: warning: 'val' may be used uninitialized in this function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:180: warning: 'val' may be used uninitialized in this function
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:535: warning: 'datavec' may be used uninitialized in this function
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c colorizers.cc -o colorizers.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c display.cc -o display.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c ruler.cc -o ruler.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c window.cc -o window.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o HilbertVisGUI.so R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -L/Library/Frameworks/GTK+.framework/Resources/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-x11-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/ppc
* DONE (HilbertVisGUI)
>>>>>>>
>>>>>>> FIXING LINKS FOR HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/ppc/HilbertVisGUI.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/ppc/HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/ppc/HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/ppc/HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/ppc/HilbertVisGUI.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=HilbertVisGUI.buildbin-libdir --libs-only HilbertVisGUI_1.12.1.tar.gz'
>>>>>>>
* installing *source* package 'HilbertVisGUI' ...
-n Checking for pkg-config...
/usr/bin/pkg-config
-n Checking for gtkmm-2.4...
found: version 2.18.2
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -fPIC -g -O2 -Wall -pedantic -c R_env_prot.c -o R_env_prot.o
R_env_prot.c: In function 'env_protect':
R_env_prot.c:49: warning: format '%p' expects type 'void *', but argument 4 has type 'SEXP'
R_env_prot.c: In function 'env_unprotect':
R_env_prot.c:75: warning: format '%p' expects type 'void *', but argument 4 has type 'SEXP'
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c R_interface.cc -o R_interface.o
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:510: warning: comparison between signed and unsigned integer expressions
R_interface.cc:509: warning: unused variable 'palette_level'
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702: warning: comparison between signed and unsigned integer expressions
R_interface.cc: In function 'RDataVector<double>* create_normal_or_Rle_RDataVector(SEXPREC*, long int, binning_mode)':
R_interface.cc:431: warning: control reaches end of non-void function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:119: warning: 'val' may be used uninitialized in this function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:180: warning: 'val' may be used uninitialized in this function
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:535: warning: 'datavec' may be used uninitialized in this function
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c colorizers.cc -o colorizers.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c display.cc -o display.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c ruler.cc -o ruler.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c window.cc -o window.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o HilbertVisGUI.so R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -L/Library/Frameworks/GTK+.framework/Resources/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-x11-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld warning: in /Library/Frameworks/GTK+.framework/Resources/lib/libgtkmm-2.4.dylib, missing required architecture x86_64 in file
ld warning: in /Library/Frameworks/GTK+.framework/Resources/lib/libatkmm-1.6.dylib, missing required architecture x86_64 in file
ld warning: in /Library/Frameworks/GTK+.framework/Resources/lib/libgdkmm-2.4.dylib, missing required architecture x86_64 in file
ld warning: in /Library/Frameworks/GTK+.framework/Resources/lib/libpangomm-1.4.dylib, missing required architecture x86_64 in file
ld warning: in /Library/Frameworks/GTK+.framework/Resources/lib/libcairomm-1.0.dylib, missing required architecture x86_64 in file
installing to /Users/biocbuild/bbs-2.9-bioc/meat/HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/x86_64
* DONE (HilbertVisGUI)
>>>>>>>
>>>>>>> FIXING LINKS FOR HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/x86_64/HilbertVisGUI.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/x86_64/HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/x86_64/HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/x86_64/HilbertVisGUI.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/x86_64/HilbertVisGUI.so"