Package: Heatplus

Version: 2.1.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch Heatplus_2.1.0.tar.gz

StartedAt: 2012-01-09 03:39:19 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 03:39:51 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 31.7 seconds

RetCode: 0

Status:  OK

CheckDir: Heatplus.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/Heatplus.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Heatplus/DESCRIPTION' ... OK
* this is package 'Heatplus' version '2.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'Heatplus' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annHeatmap2: no visible global function definition for 'clustfun'
annHeatmap2: no visible global function definition for 'distfun'
annHeatmap2: no visible binding for global variable 'cuth'
annHeatmap2: no visible binding for global variable 'asIs'
annHeatmap2: no visible binding for global variable 'inclRef'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'Heatplus' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'annHeatmap.Rnw' 
   'annHeatmapCommentedSource.Rnw' 
   'oldHeatplus.Rnw' 
** testing if installed package can be loaded

* DONE (Heatplus)

name	user	system	elapsed
RGBColVec	0.03	0.00	0.03
annHeatmap	2.52	0.02	2.55
annHeatmap2	0.33	0.00	0.33
breakColors	0.01	0.00	0.02
convAnnData	0.10	0.00	0.09
doLegend	0	0	0
g2r.colors	0	0	0
heatmapLayout	0	0	0
heatmap_2	2.2	0.0	2.2
heatmap_plus	0.89	0.03	0.96
modifyExistingList	0	0	0
niceBreaks	0	0	0
oldCutplot.dendrogram	0.04	0.00	0.05
oldPicketplot	0.03	0.00	0.03
picketPlot	0.14	0.00	0.14
plot.annHeatmap	0.27	0.00	0.27
print.annHeatmap	0.03	0.00	0.03
regHeatmap	0.03	0.00	0.03