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Package 209/516HostnameOS / ArchBUILDCHECKBUILD BIN
GenomicRanges 1.6.4
Bioconductor Package Maintainer
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/GenomicRanges
Last Changed Rev: 60803 / Revision: 61898
Last Changed Date: 2011-11-22 21:36:47 -0800 (Tue, 22 Nov 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GenomicRanges
Version: 1.6.4
Command: rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=GenomicRanges.buildbin-libdir GenomicRanges_1.6.4.tar.gz
StartedAt: 2012-01-09 06:26:00 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 06:26:14 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 14.3 seconds
RetCode: 0
Status:  OK  
PackageFile: GenomicRanges_1.6.4.zip
PackageFileSize: 1.671 MiB

Command output

* installing *source* package 'GenomicRanges' ...
** libs
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"    -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"    -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"    -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:842:23: warning: 'width' may be used uninitialized in this function
cigar_utils.c: In function 'cigar_qnarrow':
cigar_utils.c:311:17: warning: 'OPL' may be used uninitialized in this function
cigar_utils.c:311:17: note: 'OPL' was declared here
cigar_utils.c:312:7: warning: 'OP' may be used uninitialized in this function
cigar_utils.c:312:7: note: 'OP' was declared here
cigar_utils.c: In function 'cigar_narrow':
cigar_utils.c:471:17: warning: 'OPL' may be used uninitialized in this function
cigar_utils.c:471:17: note: 'OPL' was declared here
cigar_utils.c:472:7: warning: 'OP' may be used uninitialized in this function
cigar_utils.c:472:7: note: 'OP' was declared here
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1172:9: warning: 'n' may be used uninitialized in this function
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"    -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:207:44: warning: 'nlocs' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GenomicRangesIntroduction.Rnw' 
   'GenomicRangesUseCases.Rnw' 
   'summarizeOverlaps.Rnw' 
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.6.4.zip

* DONE (GenomicRanges)