Package: CRImage

Version: 1.4.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings CRImage_1.4.0.tar.gz

StartedAt: 2012-03-23 23:59:37 -0700 (Fri, 23 Mar 2012)

EndedAt: 2012-03-24 00:01:31 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 114.0 seconds

RetCode: 0

Status:  OK

CheckDir: CRImage.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/CRImage.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CRImage/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CRImage’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘CRImage’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 11.1Mb
  sub-directories of 1Mb or more:
    doc       2.1Mb
    extdata   8.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘CRImage’ ...
** R
** inst
** preparing package for lazy loading
Xlib:  extension "RANDR" missing on display ":13780.0".
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘CRImage.Rnw’ 
** testing if installed package can be loaded
Xlib:  extension "RANDR" missing on display ":13780.0".

* DONE (CRImage)

name	user	system	elapsed
CRImage-package	2.588	0.044	2.841
SauvolaThreshold	2.428	0.116	2.387
calculateCellularity	0	0	0
calculateMeanStdTarget	5.920	0.224	5.738
calculateOtsu	1.140	0.132	1.070
classifyCells	10.817	0.444	11.176
colorCorrection	4.168	0.004	4.117
convertHSVToRGB	1.512	0.008	1.309
convertLABToRGB	1.845	0.040	1.678
convertRGBToHSV	8.732	0.004	8.728
convertRGBToLAB	1.668	0.092	1.616
correctCopyNumber	0.212	0.008	0.228
createBinaryImage	5.761	0.436	6.221
createClassifier	0.864	0.012	0.886
createTrainingSet	10.276	0.232	10.157
plotCorrectedCN	0.224	0.000	0.159
processAperio	0	0	0
segmentImage	0	0	0