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Package 473/479HostnameOS / ArchBUILDCHECKBUILD BIN
xcms 1.27.3
Ralf Tautenhahn
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xcms
Last Changed Rev: 56586 / Revision: 56603
Last Changed Date: 2011-07-06 08:25:45 -0700 (Wed, 06 Jul 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: xcms
Version: 1.27.3
Command: mkdir xcms.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=xcms.buildbin-libdir xcms_1.27.3.tar.gz
StartedAt: 2011-07-07 07:19:05 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 07:20:07 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 62.1 seconds
RetCode: 0
Status:  OK  
PackageFile: xcms_1.27.3.zip
PackageFileSize: 1.831 MiB

Command output


install for i386

* installing *source* package 'xcms' ...
** libs
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/mat.cpp -o obiwarp/mat.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/vec.cpp -o obiwarp/vec.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/xcms_dynprog.cpp -o obiwarp/xcms_dynprog.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/xcms_lmat.cpp -o obiwarp/xcms_lmat.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/xcms_obiwarp.cpp -o obiwarp/xcms_obiwarp.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O3 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c fastMatch.c -o fastMatch.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O3 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c mzClust_hclust.c -o mzClust_hclust.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O3 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c mzROI.c -o mzROI.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O3 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c netCDF.c -o netCDF.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c ramp_base64.cpp -o ramp_base64.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c ramp.cpp -o ramp.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c rampR.cpp -o rampR.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O3 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c util.c -o util.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//i386 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O3 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c xcms.c -o xcms.o
g++ -shared -s -static-libgcc -o xcms.dll tmp.def obiwarp/mat.o obiwarp/vec.o obiwarp/xcms_dynprog.o obiwarp/xcms_lmat.o obiwarp/xcms_obiwarp.o fastMatch.o mzClust_hclust.o mzROI.o netCDF.o ramp_base64.o ramp.o rampR.o util.o xcms.o -L./win//i386 -lws2_32 -lnetcdf -lz -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/xcms.buildbin-libdir/xcms/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'xcmsDirect.Rnw' 
   'xcmsInstall.Rnw' 
   'xcmsMSn.Rnw' 
   'xcmsPreprocess.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'xcms' ...
** libs
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/mat.cpp -o obiwarp/mat.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/vec.cpp -o obiwarp/vec.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/xcms_dynprog.cpp -o obiwarp/xcms_dynprog.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/xcms_lmat.cpp -o obiwarp/xcms_lmat.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c obiwarp/xcms_obiwarp.cpp -o obiwarp/xcms_obiwarp.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O2 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c fastMatch.c -o fastMatch.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O2 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c mzClust_hclust.c -o mzClust_hclust.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O2 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c mzROI.c -o mzROI.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O2 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c netCDF.c -o netCDF.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c ramp_base64.cpp -o ramp_base64.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c ramp.cpp -o ramp.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN         -O2 -Wall  -mtune=core2 -c rampR.cpp -o rampR.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O2 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c util.c -o util.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN      -I./win//x64 -D_MSC_VER -DWIN32_LEAN_AND_MEAN -fgnu89-inline   -O2 -Wall  -std=gnu99 -mtune=core2 -fno-inline -c xcms.c -o xcms.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o xcms.dll tmp.def obiwarp/mat.o obiwarp/vec.o obiwarp/xcms_dynprog.o obiwarp/xcms_lmat.o obiwarp/xcms_obiwarp.o fastMatch.o mzClust_hclust.o mzROI.o netCDF.o ramp_base64.o ramp.o rampR.o util.o xcms.o -L./win//x64 -lws2_32 -lnetcdf -lz -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/xcms.buildbin-libdir/xcms/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'xcms' as xcms_1.27.3.zip

* DONE (xcms)