survcomp 1.3.1
Benjamin Haibe-Kains , Markus Schroeder
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/survcomp | | Last Changed Rev: 56260 / Revision: 56351 | | Last Changed Date: 2011-06-16 18:18:20 -0700 (Thu, 16 Jun 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=survcomp.buildbin-libdir survcomp_1.3.1.tar.gz'
>>>>>>>
* installing *source* package ‘survcomp’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c concordance.index.c -o concordance.index.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o survcomp.so concordance.index.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/survcomp.buildbin-libdir/survcomp/libs/i386
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c concordance.index.c -o concordance.index.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o survcomp.so concordance.index.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/survcomp.buildbin-libdir/survcomp/libs/ppc
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c concordance.index.c -o concordance.index.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o survcomp.so concordance.index.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/survcomp.buildbin-libdir/survcomp/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
Loading required package: splines
Loading required package: rpart
Loading required package: MASS
Loading required package: mlbench
Loading required package: nnet
Loading required package: class
Loading required package: KernSmooth
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Attaching package: ‘bootstrap’
The following object(s) are masked from ‘package:prodlim’:
jackknife
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘survcomp.Rnw’
** testing if installed package can be loaded
* DONE (survcomp)
>>>>>>>
>>>>>>> FIXING LINKS FOR survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "survcomp.buildbin-libdir/survcomp/libs/i386/survcomp.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR survcomp.buildbin-libdir/survcomp/libs/ppc/survcomp.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "survcomp.buildbin-libdir/survcomp/libs/ppc/survcomp.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/ppc/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/ppc/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "survcomp.buildbin-libdir/survcomp/libs/ppc/survcomp.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "survcomp.buildbin-libdir/survcomp/libs/x86_64/survcomp.so"