Package: siggenes

Version: 1.27.1

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings siggenes_1.27.1.tar.gz

StartedAt: 2011-07-07 02:16:13 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 02:17:09 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 55.8 seconds

RetCode: 0

Status:  OK

CheckDir: siggenes.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/siggenes.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘siggenes/DESCRIPTION’ ... OK
* this is package ‘siggenes’ version ‘1.27.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘siggenes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘siggenes’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a generic function for "print" from package "base" in package “siggenes”
Creating a generic function for "identify" from package "graphics" in package “siggenes”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘siggenes.Rnw’ 
** testing if installed package can be loaded

* DONE (siggenes)

name	user	system	elapsed
EBAM-class	0.000	0.000	0.001
SAM-class	0	0	0
chisq.ebam	0.004	0.000	0.000
chisq.stat	0	0	0
delta.plot	0	0	0
denspr	0	0	0
ebam	0	0	0
find.a0	0	0	0
help.ebam	0	0	0
help.finda0	0	0	0
help.sam	0	0	0
list.siggenes	0	0	0
md.plot	0	0	0
pi0.est	0	0	0
qvalue.cal	0	0	0
sam	0.000	0.000	0.001
sam.plot2	0	0	0
trend.ebam	0	0	0
trend.stat	0	0	0