Package: procoil

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch procoil_1.3.0.tar.gz

StartedAt: 2011-07-07 05:06:02 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 05:06:43 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 41.2 seconds

RetCode: 0

Status:  OK

CheckDir: procoil.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/procoil.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'procoil/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'procoil' version '1.3.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'procoil' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                     old_size new_size compress
  PrOCoilModel.rda      185Kb    138Kb       xz
  PrOCoilModelBA.rda    218Kb    163Kb       xz
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'procoil' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for "plot" from package "graphics" in package "procoil"
Creating a generic function for "predict" from package "stats" in package "procoil"
Creating a generic function for "weights" from package "stats" in package "procoil"
Creating a generic function for "profile" from package "stats" in package "procoil"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'procoil.Rnw' 
** testing if installed package can be loaded

* DONE (procoil)

name	user	system	elapsed
CCModel-class	0.226	0.009	0.251
CCProfile-class	0.178	0.002	0.189
plot-methods	0.326	0.001	0.335
predict-methods	0.418	0.003	0.458
procoil-package	0.393	0.004	0.421
profile-methods	0.167	0.001	0.170
readCCModel	0	0	0
show-methods	0.397	0.355	0.760
weights-methods	0.004	0.001	0.004