preprocessCore 1.15.0
Benjamin Milo Bolstad
| Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore | | Last Changed Rev: 54802 / Revision: 56603 | | Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | [ OK ] |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'preprocessCore' ...
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WARNING: this package has a configure script
It probably needs manual configuration
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** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c R_colSummarize.c -o R_colSummarize.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c R_plmd_interfaces.c -o R_plmd_interfaces.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c R_plmr_interfaces.c -o R_plmr_interfaces.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c R_rlm_interfaces.c -o R_rlm_interfaces.o
R_rlm_interfaces.c: In function 'R_rlm_rma_default_model':
R_rlm_interfaces.c:80:10: warning: unused variable 'scale'
R_rlm_interfaces.c: In function 'R_wrlm_rma_default_model':
R_rlm_interfaces.c:190:10: warning: unused variable 'scale'
R_rlm_interfaces.c: In function 'R_medianpolish_rma_default_model':
R_rlm_interfaces.c:307:11: warning: unused variable 'se'
R_rlm_interfaces.c:306:11: warning: unused variable 'weights'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c R_subColSummarize.c -o R_subColSummarize.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c avg.c -o avg.o
avg.c: In function 'colaverage_no_copy':
avg.c:90:7: warning: unused variable 'i'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c avg_log.c -o avg_log.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c biweight.c -o biweight.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c init_package.c -o init_package.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c lm.c -o lm.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c log_avg.c -o log_avg.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c log_median.c -o log_median.o
log_median.c: In function 'logmedian_no_copy':
log_median.c:138:7: warning: unused variable 'i'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c matrix_functions.c -o matrix_functions.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c median.c -o median.o
median.c: In function 'colmedian_no_copy':
median.c:146:7: warning: unused variable 'i'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c median_log.c -o median_log.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c medianpolish.c -o medianpolish.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c plmd.c -o plmd.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c plmr.c -o plmr.o
plmr.c:82:13: warning: 'XTWY_R' defined but not used
plmr.c:152:13: warning: 'XTWX_R' defined but not used
plmr.c:279:13: warning: 'XTWX_R_inv' defined but not used
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c psi_fns.c -o psi_fns.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c qnorm.c -o qnorm.o
qnorm.c: In function 'qnorm_c_determine_target':
qnorm.c:1824:7: warning: unused variable 'non_na'
qnorm.c:1819:9: warning: unused variable 'j'
qnorm.c: In function 'qnorm_c_determine_target_via_subset':
qnorm.c:2411:7: warning: unused variable 'non_na'
qnorm.c:2406:9: warning: unused variable 'j'
qnorm.c: In function 'using_target_via_subset_part2':
qnorm.c:2717:11: warning: unused variable 'datvec'
qnorm.c:2716:11: warning: unused variable 'sample_percentiles'
qnorm.c: In function 'using_target_via_subset':
qnorm.c:2866:11: warning: unused variable 'datvec'
qnorm.c:2865:11: warning: unused variable 'sample_percentiles'
qnorm.c:2861:7: warning: unused variable 'non_na'
qnorm.c:2860:7: warning: unused variable 'targetnon_na'
qnorm.c:2858:28: warning: unused variable 'target_ind_double_floor'
qnorm.c:2858:10: warning: unused variable 'target_ind_double'
qnorm.c:2857:10: warning: unused variable 'samplepercentile'
qnorm.c:2856:11: warning: unused variable 'ranks'
qnorm.c:2854:11: warning: unused variable 'row_mean'
qnorm.c:2852:14: warning: unused variable 'dimat'
qnorm.c:2850:15: warning: unused variable 'target_ind'
qnorm.c:2850:11: warning: unused variable 'ind'
qnorm.c:2850:9: warning: unused variable 'j'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c rlm.c -o rlm.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c rlm_anova.c -o rlm_anova.o
rlm_anova.c: In function 'rlm_fit_anova_given_probe_effects_engine':
rlm_anova.c:1235:10: warning: unused variable 'endprobe'
rlm_anova.c: In function 'rlm_compute_se_anova_given_probe_effects':
rlm_anova.c:1426:19: warning: unused variable 'varderivpsi'
rlm_anova.c:1426:17: warning: unused variable 'm'
rlm_anova.c:1426:10: warning: unused variable 'vs'
rlm_anova.c:1419:10: warning: unused variable 'scale'
rlm_anova.c:1418:10: warning: unused variable 'Kappa'
rlm_anova.c:1417:10: warning: unused variable 'sumderivpsi'
rlm_anova.c:1415:10: warning: unused variable 'sumpsi2'
rlm_anova.c:1414:10: warning: unused variable 'k1'
rlm_anova.c: In function 'rlm_wfit_anova_given_probe_effects_engine':
rlm_anova.c:1505:10: warning: unused variable 'endprobe'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c rlm_se.c -o rlm_se.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c rma_background4.c -o rma_background4.o
rma_background4.c: In function 'R_rma_bg_correct':
rma_background4.c:464:7: warning: unused variable 'j'
rma_background4.c:463:13: warning: 'PMcopy' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c rma_common.c -o rma_common.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c weightedkerneldensity.c -o weightedkerneldensity.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o preprocessCore.dll tmp.def R_colSummarize.o R_plmd_interfaces.o R_plmr_interfaces.o R_rlm_interfaces.o R_subColSummarize.o avg.o avg_log.o biweight.o init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o median_log.o medianpolish.o plmd.o plmr.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_background4.o rma_common.o weightedkerneldensity.o -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lRlapack -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lRblas -lgfortran -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/preprocessCore.buildbin-libdir/preprocessCore/libs/x64
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'preprocessCore' as preprocessCore_1.15.0.zip
* DONE (preprocessCore)