Package: les

Version: 1.3.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch les_1.3.0.tar.gz

StartedAt: 2011-07-07 04:51:36 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 04:53:00 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 83.9 seconds

RetCode: 0

Status:  OK

CheckDir: les.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/les.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'les/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'les' version '1.3.0'
* package encoding: UTF-8
* checking package name space information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: multicore
* checking if this is a source package ... OK
* checking whether package 'les' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'les' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for "plot" from package "graphics" in package "les"
Creating a generic function for "summary" from package "base" in package "les"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'les.Rnw' using 'UTF-8' 
** testing if installed package can be loaded

* DONE (les)

name	user	system	elapsed
Les-class	0	0	0
Les	0.02	0.02	0.04
chi2	8.5	0.0	8.5
ci	19.47	0.01	19.50
estimate	0.64	0.00	0.64
export	0	0	0
les-package	29.73	0.00	29.76
plot	0.68	0.00	0.67
regions	0.73	0.00	0.74
threshold	0.67	0.00	0.67
weighting	0.02	0.00	0.02