Package: joda

Version: 1.1.0

Command: mkdir joda.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=joda.buildbin-libdir joda_1.1.0.tar.gz >joda-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=joda.buildbin-libdir --install="check:joda-install.out" --force-multiarch --no-vignettes --timings joda_1.1.0.tar.gz && mv joda.buildbin-libdir/* joda.Rcheck/ && rmdir joda.buildbin-libdir

StartedAt: 2011-07-07 05:27:01 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 05:28:39 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 97.7 seconds

RetCode: 0

Status:  OK

CheckDir: joda.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/joda.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'joda/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'joda' version '1.1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'joda' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'joda' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: mvtnorm
Loading required package: car
Loading required package: MASS
Loading required package: nnet
Loading required package: survival
Loading required package: splines
Loading required package: lattice
Loading required package: combinat

Attaching package: 'combinat'

The following object(s) are masked from 'package:utils':

    combn

Loading required package: graph
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'JodaVignette.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'joda' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'joda' as joda_1.1.0.zip

* DONE (joda)

name	user	system	elapsed
damage	0.05	0.02	0.06
deregulation.p.values	0	0	0
deregulation.scores	2.36	0.00	2.36
differential.probs	5.91	0.02	5.92
regulation.scores	19.27	0.01	20.07