Package: goProfiles

Version: 1.15.0

Command: mkdir goProfiles.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=goProfiles.buildbin-libdir goProfiles_1.15.0.tar.gz >goProfiles-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=goProfiles.buildbin-libdir --install="check:goProfiles-install.out" --force-multiarch --no-vignettes --timings goProfiles_1.15.0.tar.gz && mv goProfiles.buildbin-libdir/* goProfiles.Rcheck/ && rmdir goProfiles.buildbin-libdir

StartedAt: 2011-07-07 05:13:07 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 05:15:23 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 136.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: goProfiles.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/goProfiles.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'goProfiles/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goProfiles' version '1.15.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goProfiles' can be installed ... WARNING
Found the following significant warnings:
  Warning: value of 'results' option should be lowercase
See 'D:/biocbld/bbs-2.9-bioc/meat/goProfiles.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.9-bioc/meat/goProfiles.Rcheck/00check.log'
for details

install for i386

* installing *source* package 'goProfiles' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: DBI

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'goProfiles.Rnw' 
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'goProfiles' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'goProfiles' as goProfiles_1.15.0.zip

* DONE (goProfiles)

name	user	system	elapsed
CD4ids	0.01	0.00	0.01
GOTermsList	0	0	0
basicProfile	3.18	0.07	3.25
compSummary	1.81	0.00	1.81
compareGOProfiles	1.66	0.01	1.67
compareGeneLists	7.47	0.09	7.56
compareProfilesLists	0	0	0
contractedProfile	0.73	0.00	0.74
conversionFunctions	0.05	0.00	0.04
drosophila	0	0	0
equivSummary	0	0	0
equivalentGOProfiles	1.62	0.04	1.66
expandedLevel	1.25	0.00	1.24
expandedProfile	0.56	0.00	0.57
fisherGOProfiles	4.11	0.01	4.14
fitGOProfile	0	0	0
hugoIds	0.02	0.00	0.02
mergeProfilesLists	3.38	0.02	3.40
ngenes	0.75	0.00	0.75
omimIds	0.00	0.01	0.01
plotProfiles	4.37	0.00	4.37
printProfiles	3.13	0.00	3.14
prostateIds	0	0	0