Package: globaltest

Version: 5.7.4

Command: mkdir globaltest.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=globaltest.buildbin-libdir globaltest_5.7.4.tar.gz >globaltest-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=globaltest.buildbin-libdir --install="check:globaltest-install.out" --force-multiarch --no-vignettes --timings globaltest_5.7.4.tar.gz && mv globaltest.buildbin-libdir/* globaltest.Rcheck/ && rmdir globaltest.buildbin-libdir

StartedAt: 2011-07-07 05:12:11 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 05:15:33 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 201.9 seconds

RetCode: 0

Status:  OK

CheckDir: globaltest.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/globaltest.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '5.7.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'globaltest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'globaltest' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a generic function for "sort" from package "base" in package "globaltest"
Creating a generic function for "model.matrix" from package "stats" in package "globaltest"
Creating a generic function for "coefficients" from package "stats" in package "globaltest"
Creating a generic function for "fitted.values" from package "stats" in package "globaltest"
Creating a generic function for "residuals" from package "stats" in package "globaltest"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GlobalTest.Rnw' 
   'GlobalTest_deprecated.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'globaltest' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'globaltest' as globaltest_5.7.4.zip

* DONE (globaltest)

name	user	system	elapsed
comparative	3.15	0.00	3.15
diagnostics	0.86	0.00	0.86
genesettesting	0	0	0
goodnessoffit	1.2	0.0	1.2
gt	0.59	0.00	0.60
gt.object-class	0.46	0.03	0.48
gtoptions	0	0	0
mlogit	0.03	0.00	0.03
multtest	0.50	0.01	0.52
v4_checkerboard	0.06	0.00	0.06
v4_geneplot	0.48	0.00	0.48
v4_globaltest	4.12	0.02	4.14
v4_multtest	0.48	0.00	0.48
v4_permutations	1.66	0.03	1.68
v4_regressionplot	1.37	0.00	1.38
v4_sampleplot	0.48	0.00	0.48
v4_sampling	31.77	0.02	31.78