girafe 1.5.1
J. Toedling
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/girafe | | Last Changed Rev: 55977 / Revision: 56351 | | Last Changed Date: 2011-06-03 03:09:23 -0700 (Fri, 03 Jun 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=girafe.buildbin-libdir girafe_1.5.1.tar.gz'
>>>>>>>
* installing *source* package ‘girafe’ ...
** libs
*** arch - i386
g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c coverage.cpp -o coverage.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c girafe_init.c -o girafe_init.o
g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o girafe.so coverage.o girafe_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/girafe.buildbin-libdir/girafe/libs/i386
*** arch - ppc
g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c coverage.cpp -o coverage.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c girafe_init.c -o girafe_init.o
g++-4.2 -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o girafe.so coverage.o girafe_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/girafe.buildbin-libdir/girafe/libs/ppc
*** arch - x86_64
g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c coverage.cpp -o coverage.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c girafe_init.c -o girafe_init.o
g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o girafe.so coverage.o girafe_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/girafe.buildbin-libdir/girafe/libs/x86_64
** R
** inst
** preparing package for lazy loading
Attaching package: ‘IRanges’
The following object(s) are masked from ‘package:base’:
Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
pmin, pmin.int, rbind, rep.int, setdiff, table, union
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: lattice
Attaching package: ‘intervals’
The following object(s) are masked from ‘package:Biostrings’:
type
The following object(s) are masked from ‘package:IRanges’:
reduce
Attaching package: ‘genomeIntervals’
The following object(s) are masked from ‘package:GenomicRanges’:
strand, strand<-
Creating a generic function for "plot" from package "graphics" in package “girafe”
Creating a generic function for "hist" from package "graphics" in package “girafe”
Creating a generic function for "sample" from package "base" in package “girafe”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘girafe.Rnw’
** testing if installed package can be loaded
* DONE (girafe)
>>>>>>>
>>>>>>> FIXING LINKS FOR girafe.buildbin-libdir/girafe/libs/i386/girafe.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "girafe.buildbin-libdir/girafe/libs/i386/girafe.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "girafe.buildbin-libdir/girafe/libs/i386/girafe.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "girafe.buildbin-libdir/girafe/libs/i386/girafe.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "girafe.buildbin-libdir/girafe/libs/i386/girafe.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR girafe.buildbin-libdir/girafe/libs/ppc/girafe.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "girafe.buildbin-libdir/girafe/libs/ppc/girafe.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "girafe.buildbin-libdir/girafe/libs/ppc/girafe.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "girafe.buildbin-libdir/girafe/libs/ppc/girafe.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "girafe.buildbin-libdir/girafe/libs/ppc/girafe.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR girafe.buildbin-libdir/girafe/libs/x86_64/girafe.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "girafe.buildbin-libdir/girafe/libs/x86_64/girafe.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "girafe.buildbin-libdir/girafe/libs/x86_64/girafe.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "girafe.buildbin-libdir/girafe/libs/x86_64/girafe.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "girafe.buildbin-libdir/girafe/libs/x86_64/girafe.so"