flowWorkspace 0.99.11
Greg Finak
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowWorkspace | | Last Changed Rev: 56181 / Revision: 56351 | | Last Changed Date: 2011-06-14 17:49:10 -0700 (Tue, 14 Jun 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ ERROR ] | skipped | skipped |
* checking for file ‘flowWorkspace/DESCRIPTION’ ... OK
* preparing ‘flowWorkspace’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
-----------------------------------
* installing *source* package ‘flowWorkspace’ ...
checking searching for non-standard locations of system libraries... /opt/local
done
checking for gcc... gcc-4.2 -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc-4.2 -arch i386 -std=gnu99 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for nc_def_var_deflate in -lnetcdf... no
configure: WARNING: --with-netcdf was given, but test for netcdf failed
configure: WARNING: Package should still build but you won't have netcdf functionality
checking for an ANSI C-conforming const... yes
checking for size_t... yes
configure: creating ./config.status
config.status: creating R/AllMethods.R
config.status: creating R/ncdfFlowSet-functions.R
config.status: creating src/Makevars
config.status: creating src/netCDF.c
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DPACKAGE_NAME=\"flowWorkspace\" -DPACKAGE_TARNAME=\"flowworkspace\" -DPACKAGE_VERSION=\"0.99.10\" -DPACKAGE_STRING=\"flowWorkspace\ 0.99.10\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I/usr/local/include -g -O2 -Wall -pedantic -I/opt/local/include -I/usr/local/include -I/usr/include -fPIC -g -O2 -Wall -pedantic -c bitOps.c -o bitOps.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DPACKAGE_NAME=\"flowWorkspace\" -DPACKAGE_TARNAME=\"flowworkspace\" -DPACKAGE_VERSION=\"0.99.10\" -DPACKAGE_STRING=\"flowWorkspace\ 0.99.10\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I/usr/local/include -g -O2 -Wall -pedantic -I/opt/local/include -I/usr/local/include -I/usr/include -fPIC -g -O2 -Wall -pedantic -c init.c -o init.o
init.c:12: warning: ISO C forbids empty initializer braces
init.c:4: error: zero or negative size array ‘CallEntries’
make: *** [init.o] Error 1
ERROR: compilation failed for package ‘flowWorkspace’
* removing ‘/private/tmp/RtmpgTVKjO/Rinst76af5028/flowWorkspace’
-----------------------------------
ERROR: package installation failed