Package: ddCt

Version: 1.7.1

Command: mkdir ddCt.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ddCt.buildbin-libdir ddCt_1.7.1.tar.gz >ddCt-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=ddCt.buildbin-libdir --install="check:ddCt-install.out" --force-multiarch --no-vignettes --timings ddCt_1.7.1.tar.gz && mv ddCt.buildbin-libdir/* ddCt.Rcheck/ && rmdir ddCt.buildbin-libdir

StartedAt: 2011-07-07 04:46:17 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 04:47:15 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 58.4 seconds

RetCode: 0

Status:  OK

CheckDir: ddCt.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/ddCt.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ddCt/DESCRIPTION' ... OK
* this is package 'ddCt' version '1.7.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ddCt' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... NOTE
'library' or 'require' call not declared from: 'RUnit'
* checking tests ...
** running tests for arch 'i386'
  Running 'unit.R'
 OK
** running tests for arch 'x64'
  Running 'unit.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'ddCt' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a generic function for "summary" from package "base" in package "ddCt"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RT-PCR-Script-ddCt.Rnw' 
   'rtPCR-usage.Rnw' 
   'rtPCR.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'ddCt' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ddCt' as ddCt_1.7.1.zip

* DONE (ddCt)

name	user	system	elapsed
InputReader-class	0	0	0
SDMFrame-class	0.06	0.02	0.08
SDMFrame	0	0	0
barploterrbar	0.01	0.00	0.02
ddCtExpression-class	0.13	0.00	0.12
ddCtExpression-methods	0.06	0.01	0.08
elistWrite-methods	0.09	0.00	0.10
errBarchartParameter-class	0	0	0
getDir	0	0	0
replaceVectorByEquality	0	0	0