Package: codelink

Version: 1.21.0

Command: mkdir codelink.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=codelink.buildbin-libdir codelink_1.21.0.tar.gz >codelink-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=codelink.buildbin-libdir --install="check:codelink-install.out" --force-multiarch --no-vignettes --timings codelink_1.21.0.tar.gz && mv codelink.buildbin-libdir/* codelink.Rcheck/ && rmdir codelink.buildbin-libdir

StartedAt: 2011-07-07 04:42:22 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 04:44:12 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 109.7 seconds

RetCode: 0

Status:  OK

CheckDir: codelink.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/codelink.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'codelink/DESCRIPTION' ... OK
* this is package 'codelink' version '1.21.0'
* checking package name space information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: multicore
* checking if this is a source package ... OK
* checking whether package 'codelink' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                       old_size new_size compress
  codelink.example.rda    842Kb    518Kb       xz
  codelink.exprset.rda    2.5Mb    1.8Mb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'codelink' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a generic function for "summary" from package "base" in package "codelink"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'CodelinkSet.Rnw' using 'latin1' 
   'codelink.Rnw' using 'latin1' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'codelink' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'codelink' as codelink_1.21.0.zip

* DONE (codelink)

name	user	system	elapsed
Codelink-class	0	0	0
CodelinkSet-class	0	0	0
CodelinkSetUnique-class	0	0	0
arrayNew	0	0	0
as.matrix.Codelink	0	0	0
averageProbes	0	0	0
bkgdCorrect	0	0	0
createWeights	0	0	0
cutCV	0	0	0
dim.Codelink	0	0	0
imageCodelink	0	0	0
logCodelink	0	0	0
mergeArray	0	0	0
na2false	0	0	0
normalize	0	0	0
normalize.loess	0	0	0
plotCorrelation	0	0	0
plotDensities	0	0	0
plotMA	0	0	0
readCodelink	0	0	0
readHeader	0	0	0
readHeaderXLS	0	0	0
writeCodelink	0	0	0