Package: apComplex

Version: 2.19.0

Command: mkdir apComplex.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=apComplex.buildbin-libdir apComplex_2.19.0.tar.gz >apComplex-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=apComplex.buildbin-libdir --install="check:apComplex-install.out" --force-multiarch --no-vignettes --timings apComplex_2.19.0.tar.gz && mv apComplex.buildbin-libdir/* apComplex.Rcheck/ && rmdir apComplex.buildbin-libdir

StartedAt: 2011-07-07 04:05:00 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 04:08:31 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 210.4 seconds

RetCode: 0

Status:  OK

CheckDir: apComplex.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/apComplex.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'apComplex/DESCRIPTION' ... OK
* this is package 'apComplex' version '2.19.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'apComplex' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                                old_size new_size compress
  HMSPCI.rda                        21Kb     10Kb    bzip2
  HMSPCIgraph.rda                   36Kb     19Kb       xz
  SBMHcHMSPCI.rda                   21Kb     10Kb    bzip2
  SBMHcTAP.rda                      15Kb      8Kb    bzip2
  TAP.rda                           19Kb      9Kb    bzip2
  TAPgraph.rda                      17Kb      9Kb       xz
  UnRBBcHMSPCI.rda                  11Kb      6Kb    bzip2
  gavin06FilteredEstimates.rda      43Kb     26Kb    bzip2
  gavinBP2006.rda                   83Kb     28Kb    bzip2
  krogan06FilteredEstimates.rda     89Kb     56Kb    bzip2
  kroganBPMat2006.rda              253Kb     84Kb    bzip2
  yNameTAP.rda                      13Kb      7Kb    bzip2
  yTAP.rda                          10Kb      7Kb    bzip2
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'apComplex' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: DBI

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'apComplex.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'apComplex' ...
** testing if installed package can be loaded
Warning message:
In fun(...) : Rgraphviz built with Graphviz version 2.20.3.
Found installed Graphviz version 2.25.20090912.445. This _may_ cause problems.
* MD5 sums
packaged installation of 'apComplex' as apComplex_2.19.0.zip

* DONE (apComplex)

name	user	system	elapsed
FilteredEstimates	0.04	0.00	0.04
HMSPCI	0.18	0.02	0.20
Krogan	0	0	0
LCjoin	0.15	0.00	0.16
MBMEcHMSPCI	0.02	0.00	0.02
MBMEcKrogan	0	0	0
MBMEcTAP	0.03	0.00	0.03
TAP	0.11	0.02	0.12
apEX	0	0	0
bhmaxSubgraph	0.09	0.00	0.09
findComplexes	0.1	0.0	0.1
gavinBP2006	0.62	0.00	0.62
kroganBPMat2006	1.62	0.03	1.66
mergeComplexes	0.13	0.01	1.40
plotComplex	0.08	0.00	0.08
sortComplexes	0.04	0.00	0.04
yNameTAP	0.1	0.0	0.1
yTAP	0	0	0