affy 1.31.2
Rafael A. Irizarry
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affy | | Last Changed Rev: 56151 / Revision: 56351 | | Last Changed Date: 2011-06-13 15:14:15 -0700 (Mon, 13 Jun 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=affy.buildbin-libdir affy_1.31.2.tar.gz'
>>>>>>>
* installing *source* package ‘affy’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c chipbackground.c -o chipbackground.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c getall_locations.c -o getall_locations.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c mas5calls.c -o mas5calls.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c rma2.c -o rma2.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c rma_common.c -o rma_common.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/affy.buildbin-libdir/affy/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Creating a generic function for "open" from package "base" in package “affy”
Creating a generic function for "close" from package "base" in package “affy”
Creating a generic function for "colnames" from package "base" in package “affy”
Creating a generic function for "barplot" from package "graphics" in package “affy”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘affy.Rnw’
‘builtinMethods.Rnw’
‘customMethods.Rnw’
‘vim.Rnw’
** testing if installed package can be loaded
* DONE (affy)
>>>>>>>
>>>>>>> FIXING LINKS FOR affy.buildbin-libdir/affy/libs/i386/affy.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "affy.buildbin-libdir/affy/libs/i386/affy.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "affy.buildbin-libdir/affy/libs/i386/affy.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "affy.buildbin-libdir/affy/libs/i386/affy.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "affy.buildbin-libdir/affy/libs/i386/affy.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=affy.buildbin-libdir --libs-only affy_1.31.2.tar.gz'
>>>>>>>
* installing *source* package ‘affy’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c chipbackground.c -o chipbackground.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c getall_locations.c -o getall_locations.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c mas5calls.c -o mas5calls.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c rma2.c -o rma2.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c rma_common.c -o rma_common.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/affy.buildbin-libdir/affy/libs/ppc
* DONE (affy)
>>>>>>>
>>>>>>> FIXING LINKS FOR affy.buildbin-libdir/affy/libs/ppc/affy.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "affy.buildbin-libdir/affy/libs/ppc/affy.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "affy.buildbin-libdir/affy/libs/ppc/affy.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "affy.buildbin-libdir/affy/libs/ppc/affy.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "affy.buildbin-libdir/affy/libs/ppc/affy.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=affy.buildbin-libdir --libs-only affy_1.31.2.tar.gz'
>>>>>>>
* installing *source* package ‘affy’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c chipbackground.c -o chipbackground.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c getall_locations.c -o getall_locations.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c mas5calls.c -o mas5calls.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c rma2.c -o rma2.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -DHAVE_ZLIB=1 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/preprocessCore/include" -fPIC -g -O2 -Wall -pedantic -c rma_common.c -o rma_common.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/affy.buildbin-libdir/affy/libs/x86_64
* DONE (affy)
>>>>>>>
>>>>>>> FIXING LINKS FOR affy.buildbin-libdir/affy/libs/x86_64/affy.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "affy.buildbin-libdir/affy/libs/x86_64/affy.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "affy.buildbin-libdir/affy/libs/x86_64/affy.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "affy.buildbin-libdir/affy/libs/x86_64/affy.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "affy.buildbin-libdir/affy/libs/x86_64/affy.so"