a4 1.1.2
Tobias Verbeke
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/a4 | | Last Changed Rev: 56260 / Revision: 56351 | | Last Changed Date: 2011-06-16 18:18:20 -0700 (Thu, 16 Jun 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/a4.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘a4/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘a4’ version ‘1.1.2’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘a4’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
‘library’ or ‘require’ call not declared from: ‘Cairo’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package ‘a4’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Loading required package: AnnotationDbi
Loading required package: annaffy
Loading required package: GO.db
Loading required package: DBI
Loading required package: KEGG.db
Loading required package: mpm
Loading required package: MASS
Loading required package: KernSmooth
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
mpm version 1.0-17
Loading required package: genefilter
Attaching package: ‘genefilter’
The following object(s) are masked from ‘package:MASS’:
area
Loading required package: limma
Loading required package: multtest
Loading required package: glmnet
Loading required package: Matrix
Loading required package: lattice
Attaching package: ‘Matrix’
The following object(s) are masked from ‘package:base’:
det
Loaded glmnet 1.7
Loading required package: a4Preproc
Loading required package: a4Core
Attaching package: ‘a4Core’
The following object(s) are masked from ‘package:limma’:
topTable
Loading required package: gplots
Loading required package: gtools
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLSX' (Excel 2007+) files.
gdata: Run the function 'installXLSXsupport()'
gdata: to automatically download and install the perl
gdata: libaries needed to support Excel XLS and XLSX formats.
Attaching package: ‘gdata’
The following object(s) are masked from ‘package:Biobase’:
combine
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nobs
The following object(s) are masked from ‘package:utils’:
object.size
Loading required package: caTools
Loading required package: bitops
Attaching package: ‘gplots’
The following object(s) are masked from ‘package:multtest’:
wapply
The following object(s) are masked from ‘package:stats’:
lowess
a4Base version 1.1.3
Loading required package: MLInterfaces
Loading required package: rpart
Loading required package: rda
Loading required package: annotate
Loading required package: cluster
Loading required package: ROCR
Loading required package: pamr
Loading required package: survival
Loading required package: splines
Loading required package: varSelRF
Loading required package: randomForest
randomForest 4.6-2
Type rfNews() to see new features/changes/bug fixes.
Attaching package: ‘randomForest’
The following object(s) are masked from ‘package:gdata’:
combine
The following object(s) are masked from ‘package:Biobase’:
combine
** help
No man pages found in package ‘a4’
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘a4vignette.Rnw’
** testing if installed package can be loaded
mpm version 1.0-17
Loaded glmnet 1.7
a4Base version 1.1.3
* DONE (a4)