Package: TDARACNE

Version: 1.3.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings TDARACNE_1.3.0.tar.gz

StartedAt: 2011-07-07 02:31:52 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 02:32:56 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 63.6 seconds

RetCode: 0

Status:  OK

CheckDir: TDARACNE.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/TDARACNE.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TDARACNE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TDARACNE’ version ‘1.3.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘TDARACNE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  inst/CITATION.txt
Most likely ‘inst/CITATION’ should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
TDARACNEdataPublished: no visible binding for global variable
  ‘dataYeast’
TDARACNEdataPublished: no visible binding for global variable
  ‘threshYeast’
TDARACNEdataPublished: no visible binding for global variable
  ‘dataSOSmean’
TDARACNEdataPublished: no visible binding for global variable
  ‘threshSOSmean’
TDARACNEdataPublished: no visible binding for global variable
  ‘dataIRMAon’
TDARACNEdataPublished: no visible binding for global variable
  ‘threshIRMAon’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘TDARACNE’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: KernSmooth
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: graph
Loading required package: grid

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘TDARACNE.Rnw’ 
** testing if installed package can be loaded

* DONE (TDARACNE)

name	user	system	elapsed
TDARACNE	3.396	0.012	3.420
TDARACNEdataPublished	25.721	0.088	25.937