Starr 1.9.2
Benedikt Zacher
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Starr | | Last Changed Rev: 55754 / Revision: 56351 | | Last Changed Date: 2011-05-20 00:39:48 -0700 (Fri, 20 May 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=Starr.buildbin-libdir Starr_1.9.2.tar.gz'
>>>>>>>
* installing *source* package ‘Starr’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c ahocorasick.c -o ahocorasick.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c collect.c -o collect.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c rm_small_peak.c -o rm_small_peak.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c sort_by_genomic.c -o sort_by_genomic.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Starr.so ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/Starr.buildbin-libdir/Starr/libs/i386
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Loading required package: RColorBrewer
Loading required package: limma
Loading required package: Matrix
Loading required package: lattice
Attaching package: ‘Matrix’
The following object(s) are masked from ‘package:base’:
det
Loading required package: grid
Attaching package: ‘affy’
The following object(s) are masked from ‘package:Ringo’:
probes
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘Starr.Rnw’
** testing if installed package can be loaded
* DONE (Starr)
>>>>>>>
>>>>>>> FIXING LINKS FOR Starr.buildbin-libdir/Starr/libs/i386/Starr.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "Starr.buildbin-libdir/Starr/libs/i386/Starr.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "Starr.buildbin-libdir/Starr/libs/i386/Starr.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "Starr.buildbin-libdir/Starr/libs/i386/Starr.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "Starr.buildbin-libdir/Starr/libs/i386/Starr.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=Starr.buildbin-libdir --libs-only Starr_1.9.2.tar.gz'
>>>>>>>
* installing *source* package ‘Starr’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c ahocorasick.c -o ahocorasick.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c collect.c -o collect.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c rm_small_peak.c -o rm_small_peak.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c sort_by_genomic.c -o sort_by_genomic.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Starr.so ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/Starr.buildbin-libdir/Starr/libs/ppc
* DONE (Starr)
>>>>>>>
>>>>>>> FIXING LINKS FOR Starr.buildbin-libdir/Starr/libs/ppc/Starr.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "Starr.buildbin-libdir/Starr/libs/ppc/Starr.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "Starr.buildbin-libdir/Starr/libs/ppc/Starr.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "Starr.buildbin-libdir/Starr/libs/ppc/Starr.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "Starr.buildbin-libdir/Starr/libs/ppc/Starr.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=Starr.buildbin-libdir --libs-only Starr_1.9.2.tar.gz'
>>>>>>>
* installing *source* package ‘Starr’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c ahocorasick.c -o ahocorasick.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c collect.c -o collect.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c rm_small_peak.c -o rm_small_peak.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c sort_by_genomic.c -o sort_by_genomic.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Starr.so ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/Starr.buildbin-libdir/Starr/libs/x86_64
* DONE (Starr)
>>>>>>>
>>>>>>> FIXING LINKS FOR Starr.buildbin-libdir/Starr/libs/x86_64/Starr.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "Starr.buildbin-libdir/Starr/libs/x86_64/Starr.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "Starr.buildbin-libdir/Starr/libs/x86_64/Starr.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "Starr.buildbin-libdir/Starr/libs/x86_64/Starr.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "Starr.buildbin-libdir/Starr/libs/x86_64/Starr.so"