Ruuid 1.31.0
Biocore Team c/o BioC user list
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Ruuid | | Last Changed Rev: 54802 / Revision: 56351 | | Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/Ruuid.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Ruuid/DESCRIPTION’ ... OK
* this is package ‘Ruuid’ version ‘1.31.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Ruuid’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package ‘Ruuid’ ...
checking for pkg-config... /usr/local/bin/pkg-config
checking for glib-config... /usr/local/bin/glib-config
checking for glib-2.0... yes
checking PKG_CFLAGS... -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include
checking PKG_LIBS... -L/Library/Frameworks/GTK+.framework/Resources/lib -lglib-2.0 -lintl
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking /usr/include/unistd.h usability... yes
checking /usr/include/unistd.h presence... yes
checking for /usr/include/unistd.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c Ruuid.c -o Ruuid.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c clear.c -o clear.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c compare.c -o compare.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c copy.c -o copy.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c gen_uuid.c -o gen_uuid.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c isnull.c -o isnull.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c pack.c -o pack.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c parse.c -o parse.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c unpack.c -o unpack.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c unparse.c -o unparse.o
unparse.c: In function ‘uuid_unparse’:
unparse.c:26: warning: format ‘%08x’ expects type ‘unsigned int’, but argument 3 has type ‘guint32’
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c uuid_time.c -o uuid_time.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ruuid.so Rinit.o Ruuid.o clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o unpack.o unparse.o uuid_time.o -L/Library/Frameworks/GTK+.framework/Resources/lib -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/Ruuid.Rcheck/Ruuid/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘Ruuid.Rnw’
** testing if installed package can be loaded
* DONE (Ruuid)