Rgraphviz 1.31.1
Kasper Hansen
| Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz | | Last Changed Rev: 55242 / Revision: 56603 | | Last Changed Date: 2011-05-03 20:37:26 -0700 (Tue, 03 May 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | N O T S U P P O R T E D |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | ERROR | OK |
* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* preparing 'Rgraphviz':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
-----------------------------------
* installing *source* package 'Rgraphviz' ...
Using the following environment variables
GRAPHVIZ_INSTALL_DIR=
GRAPHVIZ_INSTALL_MAJOR=
GRAPHVIZ_INSTALL_MINOR=
GRAPHVIZ_INSTALL_SUBMINOR=
test: 2: unknown operand
test: 2: unknown operand
test: 2: unknown operand
Using the following compilation and linking flags for Rgraphviz
PKG_CPPFLAGS=-I/include/graphviz
PKG_LIBS=-L/bin -lgvc -lgraph -lcdt
GVIZ_DEFS=-DGRAPHVIZ_MAJOR= -DGRAPHVIZ_MINOR= -DWin32
Created file src/Makevars.win
Created file R/graphviz_build_version.R
** libs
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I/include/graphviz -DGRAPHVIZ_MAJOR= -DGRAPHVIZ_MINOR= -DWin32 -O3 -Wall -std=gnu99 -mtune=core2 -c LL_funcs.c -o LL_funcs.o
In file included from LL_funcs.c:1:0:
common.h:17:20: error: operator '==' has no left operand
common.h:52:17: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
common.h:55:20: error: operator '==' has no left operand
common.h:60:14: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
In file included from LL_funcs.c:2:0:
util.h:18:28: error: expected ')' before '*' token
LL_funcs.c:5:23: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
LL_funcs.c:15:16: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
LL_funcs.c: In function 'getDefAttrs':
LL_funcs.c:31:5: error: 'Agdict_t' undeclared (first use in this function)
LL_funcs.c:31:5: note: each undeclared identifier is reported only once for each function it appears in
LL_funcs.c:31:15: error: 'dict' undeclared (first use in this function)
LL_funcs.c:31:5: warning: implicit declaration of function 'agdictof'
LL_funcs.c:34:5: warning: implicit declaration of function 'dtsize'
LL_funcs.c: At top level:
LL_funcs.c:47:20: error: operator '==' has no left operand
LL_funcs.c: In function 'Rgraphviz_getDefAttrsGraph':
LL_funcs.c:86:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:86:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:86:5: warning: implicit declaration of function 'getAgraphPtr'
LL_funcs.c: In function 'Rgraphviz_setDefAttrsGraph':
LL_funcs.c:113:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:113:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:118:5: error: 'Agsym_t' undeclared (first use in this function)
LL_funcs.c:118:14: error: 'r' undeclared (first use in this function)
LL_funcs.c:118:5: warning: implicit declaration of function 'agraphattr'
LL_funcs.c: In function 'Rgraphviz_getAttrsGraph':
LL_funcs.c:130:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:130:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:134:5: warning: implicit declaration of function 'agget'
LL_funcs.c: In function 'Rgraphviz_setAttrsGraph':
LL_funcs.c:154:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:154:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:161:5: warning: implicit declaration of function 'agsafeset'
LL_funcs.c: In function 'Rgraphviz_getAttrsCluster':
LL_funcs.c:173:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:173:15: error: 'sg' undeclared (first use in this function)
LL_funcs.c:173:5: warning: implicit declaration of function 'getClusterPtr'
LL_funcs.c: In function 'Rgraphviz_setAttrsCluster':
LL_funcs.c:197:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:197:15: error: 'sg' undeclared (first use in this function)
LL_funcs.c: In function 'Rgraphviz_getDefAttrsNode':
LL_funcs.c:216:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:216:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:219:5: error: 'Agnode_t' undeclared (first use in this function)
LL_funcs.c:219:15: error: 'n' undeclared (first use in this function)
LL_funcs.c: In function 'Rgraphviz_setDefAttrsNode':
LL_funcs.c:244:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:244:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:249:5: error: 'Agsym_t' undeclared (first use in this function)
LL_funcs.c:249:14: error: 'r' undeclared (first use in this function)
LL_funcs.c:249:5: warning: implicit declaration of function 'agnodeattr'
LL_funcs.c: In function 'Rgraphviz_getAttrsNode':
LL_funcs.c:261:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:261:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:265:5: error: 'Agnode_t' undeclared (first use in this function)
LL_funcs.c:265:15: error: 'n' undeclared (first use in this function)
LL_funcs.c:265:5: warning: implicit declaration of function 'agfindnode'
LL_funcs.c: In function 'Rgraphviz_setAttrsNode':
LL_funcs.c:290:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:290:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:294:5: error: 'Agnode_t' undeclared (first use in this function)
LL_funcs.c:294:15: error: 'n' undeclared (first use in this function)
LL_funcs.c: In function 'Rgraphviz_getDefAttrsEdge':
LL_funcs.c:313:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:313:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:316:5: error: 'Agedge_t' undeclared (first use in this function)
LL_funcs.c:316:15: error: 'e' undeclared (first use in this function)
LL_funcs.c: In function 'Rgraphviz_setDefAttrsEdge':
LL_funcs.c:341:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:341:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:346:5: error: 'Agsym_t' undeclared (first use in this function)
LL_funcs.c:346:14: error: 'r' undeclared (first use in this function)
LL_funcs.c:346:5: warning: implicit declaration of function 'agedgeattr'
LL_funcs.c: In function 'Rgraphviz_getAttrsEdge':
LL_funcs.c:358:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:358:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:363:5: error: 'Agnode_t' undeclared (first use in this function)
LL_funcs.c:363:15: error: 'u' undeclared (first use in this function)
LL_funcs.c:366:15: error: 'v' undeclared (first use in this function)
LL_funcs.c:370:5: error: 'Agedge_t' undeclared (first use in this function)
LL_funcs.c:370:15: error: 'e' undeclared (first use in this function)
LL_funcs.c:370:5: warning: implicit declaration of function 'agfindedge'
LL_funcs.c: In function 'Rgraphviz_setAttrsEdge':
LL_funcs.c:394:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:394:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:399:5: error: 'Agnode_t' undeclared (first use in this function)
LL_funcs.c:399:15: error: 'u' undeclared (first use in this function)
LL_funcs.c:402:15: error: 'v' undeclared (first use in this function)
LL_funcs.c:406:5: error: 'Agedge_t' undeclared (first use in this function)
LL_funcs.c:406:15: error: 'e' undeclared (first use in this function)
LL_funcs.c: In function 'Rgraphviz_toFile':
LL_funcs.c:424:20: error: operator '==' has no left operand
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:462:5: error: 'Agraph_t' undeclared (first use in this function)
LL_funcs.c:462:15: error: 'g' undeclared (first use in this function)
LL_funcs.c:462:19: error: 'tmpGraph' undeclared (first use in this function)
LL_funcs.c:462:16: warning: left-hand operand of comma expression has no effect
LL_funcs.c:463:16: error: 'sgs' undeclared (first use in this function)
LL_funcs.c:464:5: error: 'Agnode_t' undeclared (first use in this function)
LL_funcs.c:464:15: error: 'head' undeclared (first use in this function)
LL_funcs.c:464:22: error: 'tail' undeclared (first use in this function)
LL_funcs.c:464:19: warning: left-hand operand of comma expression has no effect
LL_funcs.c:464:29: error: 'curNode' undeclared (first use in this function)
LL_funcs.c:464:26: warning: left-hand operand of comma expression has no effect
LL_funcs.c:465:5: error: 'Agedge_t' undeclared (first use in this function)
LL_funcs.c:465:15: error: 'curEdge' undeclared (first use in this function)
LL_funcs.c:490:5: warning: implicit declaration of function 'aginit'
LL_funcs.c:492:5: warning: implicit declaration of function 'agopen'
LL_funcs.c:496:23: error: expected expression before ')' token
LL_funcs.c:510:9: warning: implicit declaration of function 'agsubg'
LL_funcs.c:535:9: warning: implicit declaration of function 'agnode'
LL_funcs.c:565:13: warning: implicit declaration of function 'agedge'
LL_funcs.c:569:5: warning: implicit declaration of function 'buildRagraph'
LL_funcs.c:571:1: warning: control reaches end of non-void function
make: *** [LL_funcs.o] Error 1
ERROR: compilation failed for package 'Rgraphviz'
* removing 'D:/biocbld/bbs-2.9-bioc/tmpdir/Rtmp0sww9O/Rinst1ecd21b6/Rgraphviz'
-----------------------------------
ERROR: package installation failed