Package: RBioinf

Version: 1.13.0

Command: mkdir RBioinf.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RBioinf.buildbin-libdir RBioinf_1.13.0.tar.gz >RBioinf-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=RBioinf.buildbin-libdir --install="check:RBioinf-install.out" --force-multiarch --no-vignettes --timings RBioinf_1.13.0.tar.gz && mv RBioinf.buildbin-libdir/* RBioinf.Rcheck/ && rmdir RBioinf.buildbin-libdir

StartedAt: 2011-07-07 06:02:11 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 06:02:54 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 43.9 seconds

RetCode: 0

Status:  OK

CheckDir: RBioinf.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/RBioinf.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RBioinf/DESCRIPTION' ... OK
* this is package 'RBioinf' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RBioinf' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.6Mb
  sub-directories of 1Mb or more:
    extdata  12.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'Rgraphviz'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'RBioinf' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c Rinit.c -o Rinit.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c rand.c -o rand.o
gcc -shared -s -static-libgcc -o RBioinf.dll tmp.def Rinit.o rand.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/RBioinf.buildbin-libdir/RBioinf/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RBioinf.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'RBioinf' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c Rinit.c -o Rinit.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c rand.c -o rand.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o RBioinf.dll tmp.def Rinit.o rand.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/RBioinf.buildbin-libdir/RBioinf/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RBioinf' as RBioinf_1.13.0.zip

* DONE (RBioinf)

name	user	system	elapsed
Rcal	0	0	0
S4Help	0	0	0
asSimpleVector	0	0	0
classList2Graph	0.24	0.00	0.23
computeClassLinearization	0.11	0.00	0.11
printWithNumbers	0	0	0
randDNA	0	0	0
simplePVect	0	0	0
simpleRand	0	0	0
simpleSort	0	0	0
subClassNames	0	0	0
superClasses	0	0	0
traceMethods	0	0	0