MEDIPS 1.3.2
Lukas Chavez
| Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MEDIPS | | Last Changed Rev: 56495 / Revision: 56603 | | Last Changed Date: 2011-07-01 10:36:09 -0700 (Fri, 01 Jul 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
install for i386
* installing *source* package 'MEDIPS' ...
** libs
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c annotate.c -o annotate.o
annotate.c: In function 'annotate':
annotate.c:21:10: warning: suggest parentheses around comparison in operand of '&'
annotate.c:32:4: warning: suggest parentheses around comparison in operand of '&'
annotate.c:43:4: warning: suggest parentheses around comparison in operand of '&'
annotate.c:8:32: warning: unused variable 'rj'
annotate.c:8:17: warning: unused variable 'aj'
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c calibration.c -o calibration.o
calibration.c: In function 'calibration':
calibration.c:10:6: warning: suggest parentheses around comparison in operand of '&'
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c coupling.c -o coupling.o
coupling.c: In function 'coupling':
coupling.c:26:9: warning: statement with no effect
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c profile.c -o profile.o
profile.c: In function 'profile':
profile.c:42:15: warning: unused variable 'wie'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:34:9: warning: unused variable 'items'
profile.c:11:22: warning: unused variable 'pvalue'
profile.c:11:18: warning: unused variable 'Val'
profile.c:25:13: warning: 'ptrgenome_raw2' may be used uninitialized in this function
profile.c:25:29: warning: 'ptrgenome_norm2' may be used uninitialized in this function
profile.c:13:96: warning: 'ptr_input' may be used uninitialized in this function
profile.c:11:39: warning: 'Y' may be used uninitialized in this function
profile.c:11:44: warning: 'nY' may be used uninitialized in this function
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c roiprofile.c -o roiprofile.o
roiprofile.c: In function 'calculate':
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:12:18: warning: unused variable 'Val'
roiprofile.c: In function 'roiprofile':
roiprofile.c:280:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:282:13: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:294:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:296:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:248:62: warning: unused variable 'nProtected'
roiprofile.c: In function 'calculate':
roiprofile.c:29:10: warning: 'IN' may be used uninitialized in this function
roiprofile.c:29:21: warning: 'ptrinput' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o MEDIPS.dll tmp.def annotate.o calibration.o coupling.o profile.o roiprofile.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/MEDIPS.buildbin-libdir/MEDIPS/libs/i386
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
pmin, pmin.int, rbind, rep.int, setdiff, table, union
Loading required package: GenomicRanges
Loading required package: Biostrings
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'MEDIPS.Rnw'
** testing if installed package can be loaded
add DLL for x64
* installing *source* package 'MEDIPS' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O2 -Wall -std=gnu99 -mtune=core2 -c annotate.c -o annotate.o
annotate.c: In function 'annotate':
annotate.c:21:10: warning: suggest parentheses around comparison in operand of '&'
annotate.c:32:4: warning: suggest parentheses around comparison in operand of '&'
annotate.c:43:4: warning: suggest parentheses around comparison in operand of '&'
annotate.c:8:32: warning: unused variable 'rj'
annotate.c:8:17: warning: unused variable 'aj'
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O2 -Wall -std=gnu99 -mtune=core2 -c calibration.c -o calibration.o
calibration.c: In function 'calibration':
calibration.c:10:6: warning: suggest parentheses around comparison in operand of '&'
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O2 -Wall -std=gnu99 -mtune=core2 -c coupling.c -o coupling.o
coupling.c: In function 'coupling':
coupling.c:26:9: warning: statement with no effect
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O2 -Wall -std=gnu99 -mtune=core2 -c profile.c -o profile.o
profile.c: In function 'profile':
profile.c:42:15: warning: unused variable 'wie'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&'
profile.c:34:9: warning: unused variable 'items'
profile.c:11:22: warning: unused variable 'pvalue'
profile.c:11:18: warning: unused variable 'Val'
profile.c:25:13: warning: 'ptrgenome_raw2' may be used uninitialized in this function
profile.c:25:29: warning: 'ptrgenome_norm2' may be used uninitialized in this function
profile.c:13:96: warning: 'ptr_input' may be used uninitialized in this function
profile.c:11:39: warning: 'Y' may be used uninitialized in this function
profile.c:11:44: warning: 'nY' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O2 -Wall -std=gnu99 -mtune=core2 -c roiprofile.c -o roiprofile.o
roiprofile.c: In function 'calculate':
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:12:18: warning: unused variable 'Val'
roiprofile.c: In function 'roiprofile':
roiprofile.c:280:7: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:282:13: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:294:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:296:6: warning: suggest parentheses around comparison in operand of '&'
roiprofile.c:248:62: warning: unused variable 'nProtected'
roiprofile.c: In function 'calculate':
roiprofile.c:29:10: warning: 'IN' may be used uninitialized in this function
roiprofile.c:29:21: warning: 'ptrinput' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o MEDIPS.dll tmp.def annotate.o calibration.o coupling.o profile.o roiprofile.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/MEDIPS.buildbin-libdir/MEDIPS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEDIPS' as MEDIPS_1.3.2.zip
* DONE (MEDIPS)