Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K [L] M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 268/479HostnameOS / ArchBUILDCHECKBUILD BIN
LPE 1.27.0
Nitin Jain
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LPE
Last Changed Rev: 54802 / Revision: 56603
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: LPE
Version: 1.27.0
Command: mkdir LPE.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LPE.buildbin-libdir LPE_1.27.0.tar.gz >LPE-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=LPE.buildbin-libdir --install="check:LPE-install.out" --force-multiarch --no-vignettes --timings LPE_1.27.0.tar.gz && mv LPE.buildbin-libdir/* LPE.Rcheck/ && rmdir LPE.buildbin-libdir
StartedAt: 2011-07-07 05:31:26 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 05:32:20 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 53.7 seconds
RetCode: 0
Status:  OK  
CheckDir: LPE.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/LPE.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LPE/DESCRIPTION' ... OK
* this is package 'LPE' version '1.27.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LPE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
            old_size new_size compress
  Ley.RData    281Kb    162Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

LPE.Rcheck/00install.out:


install for i386

* installing *source* package 'LPE' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'LPE.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'LPE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LPE' as LPE_1.27.0.zip

* DONE (LPE)

LPE.Rcheck/LPE-Ex.timings:

nameusersystemelapsed
am.trans000
baseOlig.error0.730.000.73
baseOlig.error.step10.300.000.69
baseOlig.error.step20.480.000.48
fdr.adjust3.390.003.39
fixbounds.predict.smooth.spline0.560.000.56
iqr000
lowess.normalize0.060.000.06
lpe1.110.021.12
mt.rawp2adjp0.880.010.89
n.genes.adaptive.int0.300.000.29
permute000
preprocess0.150.000.16
quan.norm000
quartile.normalize0.050.000.05
resamp.adj4.130.004.13