Package: HilbertVis

Version: 1.11.1

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings HilbertVis_1.11.1.tar.gz

StartedAt: 2011-07-07 05:21:27 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 05:22:00 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 33.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: HilbertVis.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/HilbertVis.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertVis/DESCRIPTION' ... OK
* this is package 'HilbertVis' version '1.11.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HilbertVis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' call not declared from: 'EBImage'
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
showHilbertImage: no visible global function definition for 'flip'
showHilbertImage: no visible global function definition for 'rgbImage'
showHilbertImage: no visible global function definition for 'Image'
showHilbertImage: no visible global function definition for 'display'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'HilbertVisGUI'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.9-bioc/meat/HilbertVis.Rcheck/00check.log'
for details

* installing *source* package 'HilbertVis' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c hilbert.c -o hilbert.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c make_wiggle_vector.c -o make_wiggle_vector.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c shrink_vector.c -o shrink_vector.o
gcc -shared -s -static-libgcc -o HilbertVis.dll tmp.def hilbert.o make_wiggle_vector.o shrink_vector.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/HilbertVis.Rcheck/HilbertVis/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'HilbertVis.Rnw' 
** testing if installed package can be loaded

* DONE (HilbertVis)

name	user	system	elapsed
hilbertCurve	0.02	0.00	0.02
hilbertImage	4.15	0.14	4.57
makeRandomTestData	0	0	0
makeWiggleVector	0	0	0
plotHilbertCurve	0.03	0.00	0.03
plotLongVector	0.14	0.00	0.14
showHilbertImage	0	0	0
shrinkVector	0	0	0