Package: GenomeGraphs

Version: 1.13.0

Command: mkdir GenomeGraphs.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GenomeGraphs.buildbin-libdir GenomeGraphs_1.13.0.tar.gz >GenomeGraphs-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=GenomeGraphs.buildbin-libdir --install="check:GenomeGraphs-install.out" --force-multiarch --no-vignettes --timings GenomeGraphs_1.13.0.tar.gz && mv GenomeGraphs.buildbin-libdir/* GenomeGraphs.Rcheck/ && rmdir GenomeGraphs.buildbin-libdir

StartedAt: 2011-07-07 05:04:37 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 05:08:43 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 246.3 seconds

RetCode: 0

Status:  OK

CheckDir: GenomeGraphs.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                  old_size new_size compress
  exampleData.rda     74Kb     35Kb       xz
  ideogram.rda        57Kb     33Kb       xz
  seqDataEx.rda      113Kb     34Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GenomeGraphs.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'GenomeGraphs' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomeGraphs' as GenomeGraphs_1.13.0.zip

* DONE (GenomeGraphs)

name	user	system	elapsed
AnnotationTrack-class	0	0	0
BaseTrack-class	0	0	0
DisplayPars-class	0	0	0
DisplayPars	0.59	0.08	3.76
ExonArray-class	0	0	0
Gene-class	0	0	0
GeneModel-class	0.18	0.00	0.17
GeneRegion-class	0	0	0
GenericArray-class	0	0	0
GenomeAxis-class	0	0	0
HighlightRegion-class	0	0	0
Ideogram-class	0	0	0
ImplementsTrackOverlay-class	0	0	0
Legend-class	0	0	0
MappedRead-class	0	0	0
Overlay-class	0	0	0
RectangleOverlay-class	0.02	0.00	0.01
Segmentation-class	0	0	0
Smoothing-class	0	0	0
TextOverlay-class	0	0	0
Title-class	0	0	0
TrackOverlay-class	0	0	0
Transcript-class	0	0	0
TranscriptRegion-class	0	0	0
cn	0	0	0
exonProbePos	0	0	0
gdObject-class	0	0	0
gdPlot	2.78	0.00	97.23
getPar	0.02	0.00	0.02
getSize	0	0	0
ideogramTab	0	0	0
intensity	0	0	0
makeAnnotationTrack	0.04	0.00	0.04
makeBaseTrack	0	0	0
makeExonArray	0	0	0
makeGene	0	0	0
makeGeneModel	0.02	0.00	0.02
makeGeneRegion	0	0	0
makeGenericArray	0	0	0
makeGenomeAxis	0	0	0
makeIdeogram	0	0	0
makeLegend	0	0	0
makeRectangleOverlay	0.23	0.00	0.23
makeSegmentation	0.20	0.00	0.21
makeSmoothing	0.24	0.00	0.23
makeTextOverlay	0.22	0.00	0.22
makeTitle	0	0	0
makeTranscript	0	0	0
probestart	0.01	0.00	0.02
segEnd	0	0	0
segStart	0	0	0
segments	0	0	0
seqDataEx	0.05	0.00	0.04
setPar	0.02	0.00	0.02
showDisplayOptions	0	0	0
unrData	0	0	0
unrNProbes	0	0	0
unrPositions	0	0	0
yeastCons1	0	0	0