GeneticsPed 1.15.0
David Henderson
| Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneticsPed | | Last Changed Rev: 54802 / Revision: 56603 | | Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | [ OK ] |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'GeneticsPed' ...
** libs
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -c ainverse.cc -o ainverse.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -c eibd.cc -o eibd.o
x86_64-w64-mingw32-gfortran -O2 -c ggmatmult.f -o ggmatmult.o
x86_64-w64-mingw32-gfortran -O2 -c gpi.f -o gpi.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -c inbreed.cc -o inbreed.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -c inverseAdditive.cc -o inverseAdditive.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -c meuwissen.cc -o meuwissen.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -c pedSort.cc -o pedSort.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -c pedtemplate.cc -o pedtemplate.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -c register.cc -o register.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -std=gnu99 -c sargolzaei.c -o sargolzaei.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -c sortped.cc -o sortped.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o GeneticsPed.dll tmp.def ainverse.o eibd.o ggmatmult.o gpi.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sargolzaei.o sortped.o -lgfortran -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GeneticsPed.buildbin-libdir/GeneticsPed/libs/x64
** R
** data
** inst
** preparing package for lazy loading
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLSX' (Excel 2007+) files.
gdata: Run the function 'installXLSXsupport()'
gdata: to automatically download and install the perl
gdata: libaries needed to support Excel XLS and XLSX formats.
Attaching package: 'gdata'
The following object(s) are masked from 'package:stats':
nobs
The following object(s) are masked from 'package:utils':
object.size
Loading required package: combinat
Attaching package: 'combinat'
The following object(s) are masked from 'package:utils':
combn
Loading required package: gtools
Loading required package: MASS
Loading required package: mvtnorm
NOTE: THIS PACKAGE IS NOW OBSOLETE.
The R-Genetics project has developed an set of enhanced genetics
packages to replace 'genetics'. Please visit the project homepage
at http://rgenetics.org for informtion.
Attaching package: 'genetics'
The following object(s) are masked from 'package:base':
%in%, as.factor, order
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'geneticRelatedness.Rnw'
'pedigreeHandling.Rnw'
'quanGenAnimalModel.Rnw'
** testing if installed package can be loaded
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.
NOTE: THIS PACKAGE IS NOW OBSOLETE.
The R-Genetics project has developed an set of enhanced genetics
packages to replace 'genetics'. Please visit the project homepage
at http://rgenetics.org for informtion.
Warning messages:
1: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
2: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
* MD5 sums
packaged installation of 'GeneticsPed' as GeneticsPed_1.15.0.zip
* DONE (GeneticsPed)