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Package 218/479HostnameOS / ArchBUILDCHECKBUILD BIN
GRENITS 1.4.1
Edward Morrissey
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GRENITS
Last Changed Rev: 56559 / Revision: 56603
Last Changed Date: 2011-07-05 10:02:03 -0700 (Tue, 05 Jul 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GRENITS
Version: 1.4.1
Command: mkdir GRENITS.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GRENITS.buildbin-libdir GRENITS_1.4.1.tar.gz
StartedAt: 2011-07-07 07:00:27 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 07:03:10 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 163.3 seconds
RetCode: 0
Status:  OK  
PackageFile: GRENITS_1.4.1.zip
PackageFileSize: 986.1 KiB

Command output


install for i386

* installing *source* package 'GRENITS' ...
** libs
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c AR1_Gauss_biocond.cc -o AR1_Gauss_biocond.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c AR1_Student_biocond.cc -o AR1_Student_biocond.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c AR1_biocond.cc -o AR1_biocond.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c PSplines_biocond.cc -o PSplines_biocond.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c R_C_interface.cpp -o R_C_interface.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c commonFunctions.cc -o commonFunctions.o
commonFunctions.cc:22:66: warning: declaration of 'void dtrtrs_(char*, char*, char*, arma::blas_int*, arma::blas_int*, double*, arma::blas_int*, double*, arma::blas_int*, arma::blas_int*)' with C language linkage
D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/lapack_bones.hpp:296:1: warning: conflicts with previous declaration 'void arma::lapack::dtrtrs_(char*, char*, char*, arma::blas_int*, arma::blas_int*, const double*, arma::blas_int*, double*, arma::blas_int*, arma::blas_int*)'
commonFunctions.cc: In function 'void random_intSequence(arma::ucolvec&)':
commonFunctions.cc:219:27: warning: comparison between signed and unsigned integer expressions
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c functionsErrorModel.cc -o functionsErrorModel.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c matrixManipulationFunctions.cc -o matrixManipulationFunctions.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c updateFunctions_AR1.cc -o updateFunctions_AR1.o
updateFunctions_AR1.cc: In function 'void updateCoeffAndGibbsVars(arma::mat&, arma::umat&, const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const double&, const unsigned int&)':
updateFunctions_AR1.cc:123:36: warning: comparison between signed and unsigned integer expressions
updateFunctions_AR1.cc:129:11: warning: comparison between signed and unsigned integer expressions
updateFunctions_AR1.cc: In function 'void updateCoeffAndGibbsVars_reg(arma::mat&, arma::umat&, const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const double&, const unsigned int&, const arma::umat&)':
updateFunctions_AR1.cc:174:36: warning: comparison between signed and unsigned integer expressions
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c updateFunctions_Splines.cc -o updateFunctions_Splines.o
g++ -shared -s -static-libgcc -o GRENITS.dll tmp.def AR1_Gauss_biocond.o AR1_Student_biocond.o AR1_biocond.o PSplines_biocond.o R_C_interface.o commonFunctions.o functionsErrorModel.o matrixManipulationFunctions.o updateFunctions_AR1.o updateFunctions_Splines.o D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/lib/i386/libRcpp.a -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lRlapack -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lRblas -lgfortran -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GRENITS.buildbin-libdir/GRENITS/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: reshape
Loading required package: plyr

Attaching package: 'reshape'

The following object(s) are masked from 'package:plyr':

    rename, round_any

Loading required package: grid
Loading required package: proto
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GRENITS_package.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'GRENITS' ...
** libs
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c AR1_Gauss_biocond.cc -o AR1_Gauss_biocond.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c AR1_Student_biocond.cc -o AR1_Student_biocond.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c AR1_biocond.cc -o AR1_biocond.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c PSplines_biocond.cc -o PSplines_biocond.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c R_C_interface.cpp -o R_C_interface.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c commonFunctions.cc -o commonFunctions.o
commonFunctions.cc:22:66: warning: declaration of 'void dtrtrs_(char*, char*, char*, arma::blas_int*, arma::blas_int*, double*, arma::blas_int*, double*, arma::blas_int*, arma::blas_int*)' with C language linkage
D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/lapack_bones.hpp:296:1: warning: conflicts with previous declaration 'void arma::lapack::dtrtrs_(char*, char*, char*, arma::blas_int*, arma::blas_int*, const double*, arma::blas_int*, double*, arma::blas_int*, arma::blas_int*)'
commonFunctions.cc: In function 'void random_intSequence(arma::ucolvec&)':
commonFunctions.cc:219:27: warning: comparison between signed and unsigned integer expressions
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c functionsErrorModel.cc -o functionsErrorModel.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c matrixManipulationFunctions.cc -o matrixManipulationFunctions.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c updateFunctions_AR1.cc -o updateFunctions_AR1.o
updateFunctions_AR1.cc: In function 'void updateCoeffAndGibbsVars(arma::mat&, arma::umat&, const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const double&, const unsigned int&)':
updateFunctions_AR1.cc:123:36: warning: comparison between signed and unsigned integer expressions
updateFunctions_AR1.cc:129:11: warning: comparison between signed and unsigned integer expressions
updateFunctions_AR1.cc: In function 'void updateCoeffAndGibbsVars_reg(arma::mat&, arma::umat&, const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const double&, const unsigned int&, const arma::umat&)':
updateFunctions_AR1.cc:174:36: warning: comparison between signed and unsigned integer expressions
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include"      -O2 -Wall  -mtune=core2 -c updateFunctions_Splines.cc -o updateFunctions_Splines.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o GRENITS.dll tmp.def AR1_Gauss_biocond.o AR1_Student_biocond.o AR1_biocond.o PSplines_biocond.o R_C_interface.o commonFunctions.o functionsErrorModel.o matrixManipulationFunctions.o updateFunctions_AR1.o updateFunctions_Splines.o D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/lib/x64/libRcpp.a -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lRlapack -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lRblas -lgfortran -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GRENITS.buildbin-libdir/GRENITS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GRENITS' as GRENITS_1.4.1.zip

* DONE (GRENITS)