Package: Category

Version: 2.19.1

Command: chmod a+r Category -R && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Category

StartedAt: 2011-07-06 22:27:11 -0700 (Wed, 06 Jul 2011)

EndedAt: 2011-07-06 22:29:18 -0700 (Wed, 06 Jul 2011)

EllapsedTime: 127.0 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'Category/DESCRIPTION' ... OK
* preparing 'Category':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: org.Hs.eg.db
Loading required package: DBI



Loading required package: oligoClasses
================================================================================
Welcome to oligoClasses version 1.15.9
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Welcome to SNPchip version 1.17.0
Loading required package: lattice
Warning: unexpected band notation: Xq13.3-Xq21.2 using Xq
Warning: unexpected band notation: Xq13.3-Xq21.2 using Xq
Warning: unexpected band notation: Xq13.3-Xq21.2 using Xq
Warning: unexpected band notation: Xq13.3-Xq21.2 using Xq

Error: processing vignette 'ChromBand.Rnw' failed with diagnostics:
 chunk 20 (label = LMtest) 
Error in is.function(FUN) : 'FUN' is missing
Execution halted