Package: CGHbase

Version: 1.11.0

Command: mkdir CGHbase.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CGHbase.buildbin-libdir CGHbase_1.11.0.tar.gz >CGHbase-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=CGHbase.buildbin-libdir --install="check:CGHbase-install.out" --force-multiarch --no-vignettes --timings CGHbase_1.11.0.tar.gz && mv CGHbase.buildbin-libdir/* CGHbase.Rcheck/ && rmdir CGHbase.buildbin-libdir

StartedAt: 2011-07-07 04:28:09 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 04:29:32 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 83.0 seconds

RetCode: 0

Status:  OK

CheckDir: CGHbase.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/CGHbase.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CGHbase/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CGHbase' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CGHbase' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                    old_size new_size compress
  WiltingCalled.rda    286Kb    178Kb       xz
  WiltingNorm.rda      193Kb    165Kb       xz
  WiltingRaw.rda       193Kb    165Kb       xz
  WiltingSeg.rda       213Kb    167Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'CGHbase' ...
** R
** data
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: limma
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'CGHbase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CGHbase' as CGHbase_1.11.0.zip

* DONE (CGHbase)

name	user	system	elapsed
class.cghCall	0.87	0.02	0.89
class.cghRaw	0.72	0.01	0.74
class.cghRegions	0.66	0.00	0.65
class.cghSeg	0.18	0.02	0.20
copynumber	0.07	0.00	0.07
frequencyPlot	0	0	0
summaryPlot	0	0	0