Package: Bioconductor

Version: 1.1.9

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Bioconductor_1.1.9.tar.gz

StartedAt: 2011-06-15 01:30:15 -0700 (Wed, 15 Jun 2011)

EndedAt: 2011-06-15 01:30:30 -0700 (Wed, 15 Jun 2011)

EllapsedTime: 15.3 seconds

RetCode: 0

Status:  OK

CheckDir: Bioconductor.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/Bioconductor.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Bioconductor/DESCRIPTION’ ... OK
* this is package ‘Bioconductor’ version ‘1.1.9’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Bioconductor’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
updateBioconductorPackage : bootstrap: no visible binding for global
  variable ‘contribUrl’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

* installing *source* package ‘Bioconductor’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Bioconductor package version 1.1.9 loaded, type ?biocLite for help

* DONE (Bioconductor)

name	user	system	elapsed
biocLite	0.028	0.003	0.031
biocinstallRepos	0.004	0.000	0.004