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Package 66/472HostnameOS / ArchBUILDCHECKBUILD BIN
BioNet 1.11.1
Marcus Dittrich
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioNet
Last Changed Rev: 56260 / Revision: 56351
Last Changed Date: 2011-06-16 18:18:20 -0700 (Thu, 16 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: BioNet
Version: 1.11.1
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BioNet_1.11.1.tar.gz
StartedAt: 2011-06-22 01:46:01 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 01:50:04 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 243.8 seconds
RetCode: 0
Status:  OK 
CheckDir: BioNet.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/BioNet.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BioNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BioNet’ version ‘1.11.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘BioNet’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

BioNet.Rcheck/00install.out:

* installing *source* package ‘BioNet’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘Tutorial.Rnw’ 
** testing if installed package can be loaded

* DONE (BioNet)

BioNet.Rcheck/BioNet-Ex.timings:

nameusersystemelapsed
aggrPvals1.0800.0751.164
bumOptim1.1760.3311.531
compareNetworks2.3310.1432.647
fbum000
fbumLL1.3890.3301.735
fdrThreshold1.3800.3491.755
fitBumModel1.7630.3392.133
getCompScores3.7930.2074.456
getEdgeList1.4190.0451.475
hist.bum1.7450.3412.107
largestComp16.955 2.41919.596
largestScoreComp18.246 2.63021.103
loadNetwork.sif0.0000.0010.000
makeNetwork0.0130.0000.013
mapByVar000
permutateNodes20.503 2.62223.295
piUpper1.2280.3571.615
plot.bum2.0510.3552.498
plot3dModule5.6050.9106.614
plotLLSurface1.5360.2081.770
plotModule4.8720.9155.847
print.bum1.3280.3451.705
pvaluesExample0.0180.0020.020
readHeinzGraph0.5420.0060.551
readHeinzTree0.5490.0070.566
rmSelfLoops0.0130.0000.013
runFastHeinz13.466 1.42815.044
save3dModule3.9610.7704.814
saveNetwork2.2860.0822.460
scanFDR1.1510.3501.516
scoreFunction1.2160.4161.644
scoreNodes5.5370.9256.602
scoreOffset1.6630.3322.013
subNetwork0.0600.0030.064
summary.bum1.7250.3462.091
writeHeinz4.5950.7665.433
writeHeinzEdges10.168 1.00011.298
writeHeinzNodes4.5190.7205.285