Package: ArrayTools

Version: 1.13.0

Command: mkdir ArrayTools.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ArrayTools.buildbin-libdir ArrayTools_1.13.0.tar.gz >ArrayTools-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=ArrayTools.buildbin-libdir --install="check:ArrayTools-install.out" --force-multiarch --no-vignettes --timings ArrayTools_1.13.0.tar.gz && mv ArrayTools.buildbin-libdir/* ArrayTools.Rcheck/ && rmdir ArrayTools.buildbin-libdir

StartedAt: 2011-07-07 04:08:32 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 04:10:23 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 110.6 seconds

RetCode: 0

Status:  OK

CheckDir: ArrayTools.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/ArrayTools.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ArrayTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ArrayTools' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ArrayTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
preProcessGeneST: no visible binding for global variable
  'hugene10stCONTROL'
preProcessGeneST: no visible binding for global variable
  'mogene10stCONTROL'
regress: no visible global function definition for 'permute.1'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'ArrayTools' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a generic function for "summary" from package "base" in package "ArrayTools"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ArrayTools.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'ArrayTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ArrayTools' as ArrayTools_1.13.0.zip

* DONE (ArrayTools)

name	user	system	elapsed
Output2HTML	0.18	0.00	0.17
QC	0	0	0
Sort	0.10	0.00	0.11
contrastMatrix-class	0.05	0.00	0.05
createExpressionSet	0.11	0.00	0.11
createGSEAFiles	0.02	0.00	0.01
createIndex	0.42	0.00	0.42
createIngenuityFile	0.09	0.00	0.10
designMatrix-class	0.03	0.00	0.03
eSetExample	0	0	0
exprsExample	0.02	0.00	0.01
geneFilter	0.93	0.00	0.94
interactionResult-class	0.35	0.00	0.34
pDataExample	0	0	0
postInteraction	0.34	0.00	0.35
preProcess3prime	4.48	0.03	4.51
preProcessGeneST	0.01	0.00	0.01
qa3prime	0	0	0
qaGeneST	0.02	0.00	0.02
regress	0.23	0.00	0.23
regressResult-class	0.10	0.00	0.09
selectSigGene	0.12	0.00	0.13
selectSigGeneInt	0.3	0.0	0.3