AnnotationDbi 1.15.9
Biocore Team c/o BioC user list
| Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/AnnotationDbi | | Last Changed Rev: 55942 / Revision: 56603 | | Last Changed Date: 2011-06-01 14:48:42 -0700 (Wed, 01 Jun 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/AnnotationDbi.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘AnnotationDbi/DESCRIPTION’ ... OK
* this is package ‘AnnotationDbi’ version ‘1.15.9’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘AnnotationDbi’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 10.9Mb
sub-directories of 1Mb or more:
extdata 3.2Mb
AnnDbPkg-templates 5.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getSubNodeInfo: no visible global function definition for ‘Stop’
annotMessage: no visible binding for global variable ‘pkgName’
createORGANISMSeeds: no visible global function definition for
‘makeAnnDbMapSeeds’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
‘library’ or ‘require’ call not declared from: ‘org.Hs.eg.db’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package ‘AnnotationDbi’ ...
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Creating a generic function for "toString" from package "base" in package “AnnotationDbi”
Creating a generic function for "rev" from package "base" in package “AnnotationDbi”
Creating a generic function for "colnames" from package "base" in package “AnnotationDbi”
Creating a generic function for "subset" from package "base" in package “AnnotationDbi”
Creating a generic function for "as.data.frame" from package "base" in package “AnnotationDbi”
Creating a generic function for "head" from package "utils" in package “AnnotationDbi”
Creating a generic function for "tail" from package "utils" in package “AnnotationDbi”
Creating a generic function for "nrow" from package "base" in package “AnnotationDbi”
Creating a generic function for "ncol" from package "base" in package “AnnotationDbi”
Creating a generic function for "as.list" from package "base" in package “AnnotationDbi”
Creating a generic function for "ls" from package "base" in package “AnnotationDbi”
Creating a generic function for "mget" from package "base" in package “AnnotationDbi”
Creating a generic function for "eapply" from package "base" in package “AnnotationDbi”
Creating a generic function for "get" from package "base" in package “AnnotationDbi”
Creating a generic function for "exists" from package "base" in package “AnnotationDbi”
Creating a generic function for "sample" from package "base" in package “AnnotationDbi”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘AnnotationDbi.Rnw’
‘NewSchema.Rnw’
‘SQLForge.Rnw’
‘makeProbePackage.Rnw’
** testing if installed package can be loaded
* DONE (AnnotationDbi)