Package: AgiMicroRna

Version: 2.3.1

Command: mkdir AgiMicroRna.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AgiMicroRna.buildbin-libdir AgiMicroRna_2.3.1.tar.gz >AgiMicroRna-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=AgiMicroRna.buildbin-libdir --install="check:AgiMicroRna-install.out" --force-multiarch --no-vignettes --timings AgiMicroRna_2.3.1.tar.gz && mv AgiMicroRna.buildbin-libdir/* AgiMicroRna.Rcheck/ && rmdir AgiMicroRna.buildbin-libdir

StartedAt: 2011-07-07 04:01:55 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 04:09:37 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 462.0 seconds

RetCode: 0

Status:  OK

CheckDir: AgiMicroRna.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/AgiMicroRna.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AgiMicroRna/DESCRIPTION' ... OK
* this is package 'AgiMicroRna' version '2.3.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AgiMicroRna' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
               old_size new_size compress
  dd.micro.rda    1.7Mb    1.2Mb       xz
  ddPROC.rda       54Kb     45Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'AgiMicroRna' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI

Loading required package: KEGG.db

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'AgiMicroRna.Rnw' using 'latin1' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'AgiMicroRna' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AgiMicroRna' as AgiMicroRna_2.3.1.zip

* DONE (AgiMicroRna)

name	user	system	elapsed
HeatMapMicroRna	0.77	0.02	1.21
PCAplotMicroRna	0.23	0.00	0.24
RleMicroRna	2.57	0.01	2.59
basicLimma	0	0	0
boxplotMicroRna	0.47	0.00	3.59
cvArray	0	0	0
filterMicroRna	2.01	0.14	2.22
getDecideTests	0	0	0
hierclusMicroRna	0.02	0.00	0.01
mvaBASIC	2.14	0.00	2.17
mvaMicroRna	17.73	0.07	19.76
plotDensityMicroRna	0.3	0.0	0.3
pvalHistogram	0	0	0
qcPlots	0	0	0
readMicroRnaAFE	0	0	0
rmaMicroRna	55.72	0.07	55.80
significantMicroRna	0.77	0.03	0.80
tgsMicroRna	0.6	0.0	0.6
tgsNormalization	0	0	0
uRNAList	0	0	0
writeEset	0	0	0