Package: AffyCompatible

Version: 1.13.0

Command: mkdir AffyCompatible.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AffyCompatible.buildbin-libdir AffyCompatible_1.13.0.tar.gz >AffyCompatible-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=AffyCompatible.buildbin-libdir --install="check:AffyCompatible-install.out" --force-multiarch --no-vignettes --timings AffyCompatible_1.13.0.tar.gz && mv AffyCompatible.buildbin-libdir/* AffyCompatible.Rcheck/ && rmdir AffyCompatible.buildbin-libdir

StartedAt: 2011-07-07 03:56:28 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 04:00:54 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 265.9 seconds

RetCode: 0

Status:  OK

CheckDir: AffyCompatible.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/AffyCompatible.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AffyCompatible' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AffyCompatible' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'AffyCompatible' ...
** R
** inst
** preparing package for lazy loading
Loading required package: bitops
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'MAGEAndARR.Rnw' 
   'NetAffxResource.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'AffyCompatible' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AffyCompatible' as AffyCompatible_1.13.0.zip

* DONE (AffyCompatible)

name	user	system	elapsed
AffyCompatible-class	0	0	0
NetAffxResource-class	1.36	0.13	5.37
readArr	0.62	0.00	0.62
readMage	3.95	0.00	3.95
readNetAffx	0	0	0
readXml	0.22	0.00	0.22
xclass	0.28	0.01	0.31
zzz-ARRCompatibility-class	0	0	0
zzz-DTTCompatibility-class	0.00	0.02	0.01
zzz-NetAffxCompatibility-class	0	0	0