Package: plateCore

Version: 1.11.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings plateCore_1.11.0.tar.gz

StartedAt: 2011-05-09 19:05:22 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 19:09:18 -0700 (Mon, 09 May 2011)

EllapsedTime: 235.3 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/plateCore.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'plateCoreVig.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	3.97	0.03	4.00
applyControlGates-methods	15.55	0.00	15.55
compensate-methods	5.62	0.00	5.62
compensationSet	0.21	0.00	0.21
densityplot-methods	1.62	0.00	1.62
fixAutoFl-methods	5.61	0.00	5.63
flowPlate-class	3.56	0.00	3.56
flowPlate-method	3.47	0.01	3.48
fpbind-methods	7.44	0.02	7.47
getGroups-methods	1.41	0.02	1.42
gutterPlot-methods	1.53	0.00	1.53
mfiPlot-methods	15.59	0.00	15.60
on-methods	9.50	0.01	9.51
panel.densityplot.flowPlate	1.69	0.00	1.69
panel.xyplot.flowPlate	1.59	0.00	1.59
plateCore-package	3.31	0.00	3.32
plateSet-methods	3.25	0.00	3.25
plotPlate-methods	3.65	0.00	3.64
prepanel.densityplot.flowPlate	1.62	0.00	1.63
prepanel.xyplot.flowPlate	1.58	0.01	1.59
setControlGates-methods	3.64	0.02	3.67
summaryStats-methods	15.91	0.01	15.92
wellAnnotation-methods	1.45	0.00	1.45
xyplot-methods	1.58	0.00	1.58