affyPLM 1.29.1
Ben Bolstad
| Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affyPLM | | Last Changed Rev: 55189 / Revision: 55359 | | Last Changed Date: 2011-04-30 16:17:17 -0700 (Sat, 30 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | [ OK ] |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'affyPLM' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c LESN.c -o LESN.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c PLM_avg_log.c -o PLM_avg_log.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c PLM_biweight.c -o PLM_biweight.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c PLM_log_avg.c -o PLM_log_avg.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c PLM_medianPM.c -o PLM_medianPM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c PLM_median_logPM.c -o PLM_median_logPM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c PLM_medianpolish.c -o PLM_medianpolish.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c PLM_modelmatrix.c -o PLM_modelmatrix.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c SCAB.c -o SCAB.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c chipbackground.c -o chipbackground.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c common_types.c -o common_types.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c do_PLMrlm.c -o do_PLMrlm.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c do_PLMrma.c -o do_PLMrma.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c do_PLMthreestep.c -o do_PLMthreestep.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c idealmismatch.c -o idealmismatch.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c lm_threestep.c -o lm_threestep.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c matrix_functions.c -o matrix_functions.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c nthLargestPM.c -o nthLargestPM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c preprocess.c -o preprocess.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c psi_fns.c -o psi_fns.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c qnorm_probeset.c -o qnorm_probeset.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c read_rmaexpress.c -o read_rmaexpress.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c rlm_PLM.c -o rlm_PLM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c rlm_threestep.c -o rlm_threestep.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c rma_PLM.c -o rma_PLM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c rma_common.c -o rma_common.o
rma_common.c: In function 'median':
rma_common.c:60:7: warning: unused variable 'i'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c scaling.c -o scaling.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c threestep.c -o threestep.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c threestep_PLM.c -o threestep_PLM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c threestep_common.c -o threestep_common.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c threestep_summary.c -o threestep_summary.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c threestep_summary_methods.c -o threestep_summary_methods.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.9-bioc/R/include" -DHAVE_ZLIB -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -O2 -Wall -std=gnu99 -c transfns.c -o transfns.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o affyPLM.dll tmp.def LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o SCAB.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o -lgfortran -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lRlapack -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lRblas -lRzlib -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/affyPLM.buildbin-libdir/affyPLM/libs/x64
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Creating a new generic function for "summary" in "affyPLM"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'AffyExtensions.Rnw'
'MAplots.Rnw'
'QualityAssess.Rnw'
'ThreeStep.Rnw'
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affyPLM' as affyPLM_1.29.1.zip
* DONE (affyPLM)