Package: HTqPCR

Version: 1.7.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings HTqPCR_1.7.0.tar.gz

StartedAt: 2011-04-19 12:29:52 -0700 (Tue, 19 Apr 2011)

EndedAt: 2011-04-19 12:31:18 -0700 (Tue, 19 Apr 2011)

EllapsedTime: 86.0 seconds

RetCode: 0

Status:  OK

CheckDir: HTqPCR.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/HTqPCR.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-06 r55347)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTqPCR’ version ‘1.7.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘HTqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘HTqPCR.Rnw’ 
** testing if installed package can be loaded

* DONE (HTqPCR)

name	user	system	elapsed
HTqPCR-package	4.536	0.028	4.564
cbind	0.048	0.000	0.048
changeCtLayout	0.040	0.000	0.039
clusterCt	0.620	0.012	0.633
filterCategory	0.088	0.000	0.088
filterCtData	0.220	0.004	0.224
heatmapSig	1.652	0.004	1.656
limmaCtData	0.992	0.008	1.001
mannwhitneyCtData	1.444	0.004	1.466
normalizeCtData	0.352	0.008	0.361
plotCVBoxes	0.164	0.000	0.164
plotCtArray	0.132	0.000	0.131
plotCtBoxes	0.056	0.000	0.054
plotCtCard	0.044	0.004	0.050
plotCtCategory	3.436	0.032	3.475
plotCtCor	0.049	0.004	0.055
plotCtDensity	0.032	0.004	0.037
plotCtHeatmap	3.196	0.016	3.214
plotCtHistogram	0.008	0.000	0.010
plotCtOverview	0.108	0.000	0.109
plotCtPCA	0.044	0.000	0.043
plotCtPairs	0.692	0.004	0.694
plotCtRQ	0.356	0.004	0.364
plotCtReps	0.136	0.000	0.137
plotCtScatter	0.024	0.000	0.024
plotCtSignificance	0.408	0.012	0.422
plotCtVariation	0.752	0.000	0.755
plotGenes	0.024	0.000	0.027
qPCRpros	0.004	0.000	0.005
qPCRraw	0.004	0.000	0.005
qPCRset-class	0.028	0.000	0.026
readCtData	0.064	0.000	0.062
setCategory	6.604	0.024	6.759
ttestCtData	1.044	0.004	1.047