Package: hgu2beta7

Version: 1.2.2

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings hgu2beta7_1.2.2.tar.gz

StartedAt: 2011-10-19 01:08:34 -0700 (Wed, 19 Oct 2011)

EndedAt: 2011-10-19 01:10:07 -0700 (Wed, 19 Oct 2011)

EllapsedTime: 92.3 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: hgu2beta7.Rcheck

Warnings: 2

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/hgu2beta7.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hgu2beta7/DESCRIPTION’ ... OK
* this is package ‘hgu2beta7’ version ‘1.2.2’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘hgu2beta7’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: annotate
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  Rdata.rdb Rdata.rds Rdata.rdx
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/hgu2beta7.Rcheck/00check.log’
for details

* installing *source* package ‘hgu2beta7’ ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (hgu2beta7)

name	user	system	elapsed
hgu2beta7ACCNUM	0.504	0.016	0.517
hgu2beta7CHR	0.316	0.004	0.321
hgu2beta7CHRLENGTHS	0.004	0.000	0.000
hgu2beta7CHRLOC	0.324	0.004	0.330
hgu2beta7ENZYME	0.308	0.000	0.306
hgu2beta7ENZYME2PROBE	0.008	0.000	0.006
hgu2beta7GENENAME	0.348	0.000	0.347
hgu2beta7GO	2.664	0.060	2.724
hgu2beta7GO2ALLPROBES	0.544	0.028	0.571
hgu2beta7GO2PROBE	0.088	0.000	0.088
hgu2beta7GRIF	0.404	0.032	0.436
hgu2beta7LOCUSID	0.148	0.000	0.148
hgu2beta7MAP	0.176	0.000	0.178
hgu2beta7OMIM	0.18	0.00	0.18
hgu2beta7ORGANISM	0	0	0
hgu2beta7PATH	0.18	0.00	0.18
hgu2beta7PATH2PROBE	0.004	0.000	0.005
hgu2beta7PMID	0.288	0.000	0.290
hgu2beta7PMID2PROBE	1.840	0.004	1.845
hgu2beta7REFSEQ	0.788	0.000	0.793
hgu2beta7SUMFUNC	0.364	0.008	0.372
hgu2beta7SYMBOL	0.704	0.000	0.702
hgu2beta7UNIGENE	0.288	0.008	0.296