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harbChIP 1.0.6
VJ Carey
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/harbChIP
Last Changed Rev: 1684 / Revision: 1763
Last Changed Date: 2011-07-07 16:13:49 -0700 (Thu, 07 Jul 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: harbChIP
Version: 1.0.6
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch harbChIP_1.0.6.tar.gz
StartedAt: 2011-10-19 01:28:28 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 01:30:51 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 142.9 seconds
RetCode: 0
Status:  OK 
CheckDir: harbChIP.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-data-experiment/meat/harbChIP.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'harbChIP/DESCRIPTION' ... OK
* this is package 'harbChIP' version '1.0.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'harbChIP' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   7.1Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
chkAllUS: no visible binding for global variable 'sceUpstr'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

harbChIP.Rcheck/00install.out:

* installing *source* package 'harbChIP' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (harbChIP)

harbChIP.Rcheck/harbChIP-Ex.timings:

nameusersystemelapsed
allhex1.0560.0581.186
buildUpstreamSeqs20.0000.0000.001
chkMotif4TF000
harbChIP4.3760.2084.788
sceUpstream0.6710.0220.735
upstreamSeqs-class0.7950.0230.866