charmData 0.99.3
Martin Aryee
| Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/charmData | | Last Changed Rev: 1337 / Revision: 1763 | | Last Changed Date: 2010-10-13 17:43:10 -0700 (Wed, 13 Oct 2010) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | [ WARNINGS ] | |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/charmData.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘charmData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘charmData’ version ‘0.99.3’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘charmData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 48.7Mb
sub-directories of 1Mb or more:
data 48.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
136421_532.xys 136421_635.xys 136600_532.xys 136600_635.xys
3788602_532.xys 3788602_635.xys 3822402_532.xys 3822402_635.xys
5739902_532.xys 5739902_635.xys 5875602_532.xys 5875602_635.xys
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
WARNING: There were 2 warnings, see
‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/charmData.Rcheck/00check.log’
for details
* installing *source* package ‘charmData’ ...
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
by using mclust, invoked on its own or through another package,
you accept the license agreement in the mclust LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt
Welcome to charm version 1.4.0
================================================================================
Welcome to oligoClasses version 1.14.0
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
- Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
- Load 'ff'
- Load 'snow'
- Use options(cluster=makeCluster(...))
================================================================================
================================================================================
Welcome to oligo version 1.16.2
================================================================================
* DONE (charmData)