Package: XhybCasneuf

Version: 1.0.6

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch XhybCasneuf_1.0.6.tar.gz

StartedAt: 2011-07-03 00:55:12 -0700 (Sun, 03 Jul 2011)

EndedAt: 2011-07-03 00:56:13 -0700 (Sun, 03 Jul 2011)

EllapsedTime: 61.0 seconds

RetCode: 0

Status:  OK

CheckDir: XhybCasneuf.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-data-experiment/meat/XhybCasneuf.Rcheck'
* using R version 2.13.0 (2011-04-13)
* using platform: x86_64-apple-darwin9.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'XhybCasneuf/DESCRIPTION' ... OK
* this is package 'XhybCasneuf' version '1.0.6'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'XhybCasneuf' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'Xhyb.pdf' from 338Kb to 231Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'XhybCasneuf' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.


Attaching package: 'tinesath1cdf'

The following object(s) are masked from 'package:ath1121501cdf':

    i2xy, xy2i

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (XhybCasneuf)

name	user	system	elapsed
AffysTissue	0.443	0.007	0.450
CustomsTissue	0.276	0.004	0.280
XhybExamples-class	0.052	0.006	0.058
ex1	0.051	0.006	0.058
runSimulation	0.050	0.000	0.052